RNA–Protein interactions for RNA: ENST00000589054.5

NEDD4L-225, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, humanhuman

TSL 3 BASIC

Gene NEDD4L, Length 1,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4L-225ENST00000589054 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.58■■■□□ 2.972e-19■■■■■ 288.6
NEDD4L-225ENST00000589054 DDX6P26196 483 aaKnown RBP eCLIP22.86■■□□□ 1.259e-8■■■■■ 192.2
NEDD4L-225ENST00000589054 SF3B1O75533 1304 aaKnown RBP eCLIP23.51■■□□□ 1.352e-6■■■■■ 184
NEDD4L-225ENST00000589054 RBFOX2O43251 390 aaKnown RBP eCLIP15.93■□□□□ 0.146e-12■■■■■ 173.3
NEDD4L-225ENST00000589054 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.66■■□□□ 1.222e-7■■■■■ 126.4
NEDD4L-225ENST00000589054 CSTF2P33240 577 aaKnown RBP eCLIP21.11■□□□□ 0.978e-8■■■■■ 93.4
NEDD4L-225ENST00000589054 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.95■□□□□ 0.783e-7■■■■■ 85.3
NEDD4L-225ENST00000589054 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.9■□□□□ 0.621e-6■■■■■ 58.1
NEDD4L-225ENST00000589054 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.59■□□□□ 0.253e-7■■■■■ 51.9
NEDD4L-225ENST00000589054 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.32■□□□□ 0.682e-11■■■■■ 40.8
NEDD4L-225ENST00000589054 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.55■□□□□ 0.882e-6■■■■■ 37.9
NEDD4L-225ENST00000589054 PCBP2Q15366 365 aaKnown RBP eCLIP19.63■□□□□ 0.738e-7■■■■■ 34.3
NEDD4L-225ENST00000589054 NCBP2P52298 156 aaKnown RBP eCLIP19.26■□□□□ 0.671e-35■■■■■ 27.9
NEDD4L-225ENST00000589054 U2AF2P26368 475 aaKnown RBP eCLIP23.54■■□□□ 1.362e-6■■■■□ 26
NEDD4L-225ENST00000589054 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.46■□□□□ 0.554e-7■■■■□ 25.4
NEDD4L-225ENST00000589054 AQRO60306 1485 aaKnown RBP eCLIP39.04■■■■□ 3.843e-8■■■■□ 24.8
NEDD4L-225ENST00000589054 MATR3P43243 847 aaKnown RBP eCLIP23.23■■□□□ 1.319e-7■■■■□ 24
NEDD4L-225ENST00000589054 BCCIPQ9P287 314 aaKnown RBP eCLIP22.47■■□□□ 1.195e-9■■■■□ 23.6
NEDD4L-225ENST00000589054 SRSF9Q13242 221 aaKnown RBP eCLIP13.24□□□□□ -0.296e-8■■■■□ 23.6
NEDD4L-225ENST00000589054 HNRNPMP52272 730 aaKnown RBP eCLIP34.53■■■■□ 3.127e-7■■■■□ 23.1
NEDD4L-225ENST00000589054 PTBP1P26599 531 aaKnown RBP eCLIP15.89■□□□□ 0.136e-7■■■■□ 22.8
NEDD4L-225ENST00000589054 QKIQ96PU8 341 aaKnown RBP eCLIP20.91■□□□□ 0.942e-8■■■■□ 22.4
NEDD4L-225ENST00000589054 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.83■□□□□ 0.932e-6■■■■□ 21.6
NEDD4L-225ENST00000589054 DDX3XO00571 662 aaKnown RBP eCLIP21.48■■□□□ 1.036e-9■■■■□ 20.8
NEDD4L-225ENST00000589054 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.72■■□□□ 1.711e-6■■■■□ 20.5
NEDD4L-225ENST00000589054 HNRNPUQ00839 825 aaKnown RBP eCLIP26.32■■□□□ 1.82e-6■■■■□ 20.4
NEDD4L-225ENST00000589054 RBM5P52756 815 aaKnown RBP eCLIP26.88■■□□□ 1.891e-7■■■■□ 20.1
NEDD4L-225ENST00000589054 GTF2F1P35269 517 aaKnown RBP eCLIP24.28■■□□□ 1.481e-6■■■■□ 19.7
NEDD4L-225ENST00000589054 YBX3P16989 372 aaKnown RBP eCLIP29.31■■■□□ 2.287e-7■■■□□ 19.1
NEDD4L-225ENST00000589054 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.02■■□□□ 1.122e-7■■■□□ 18.8
NEDD4L-225ENST00000589054 ILF3Q12906 894 aaKnown RBP eCLIP21.25■□□□□ 0.991e-6■■■□□ 18.7
NEDD4L-225ENST00000589054 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.06■□□□□ 0.642e-13■■■□□ 18.3
NEDD4L-225ENST00000589054 RBM15Q96T37 977 aaKnown RBP eCLIP21.44■■□□□ 1.028e-9■■■□□ 17.9
NEDD4L-225ENST00000589054 PRPF4O43172 522 aaKnown RBP eCLIP20.17■□□□□ 0.827e-7■■■□□ 17.8
NEDD4L-225ENST00000589054 HNRNPKP61978 463 aaKnown RBP eCLIP21.63■■□□□ 1.056e-7■■■□□ 17.2
NEDD4L-225ENST00000589054 TIA1P31483 386 aaKnown RBP eCLIP19.33■□□□□ 0.682e-7■■■□□ 17.1
NEDD4L-225ENST00000589054 FUBP3Q96I24 572 aaKnown RBP eCLIP22.84■■□□□ 1.251e-7■■■□□ 17
NEDD4L-225ENST00000589054 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.39■■■□□ 2.462e-6■■■□□ 16.9
NEDD4L-225ENST00000589054 HNRNPLP14866 589 aaKnown RBP eCLIP22.71■■□□□ 1.234e-7■■■□□ 16.8
NEDD4L-225ENST00000589054 GRSF1Q12849 480 aaKnown RBP eCLIP22.8■■□□□ 1.247e-12■■■□□ 16.7
NEDD4L-225ENST00000589054 LSM11P83369 360 aaKnown RBP eCLIP18.52■□□□□ 0.563e-7■■■□□ 16.7
NEDD4L-225ENST00000589054 U2AF1Q01081 240 aaKnown RBP eCLIP28.61■■■□□ 2.173e-7■■■□□ 16.4
NEDD4L-225ENST00000589054 CDC40O60508 579 aaKnown RBP eCLIP19.82■□□□□ 0.761e-13■■■□□ 15.6
NEDD4L-225ENST00000589054 UPF1Q92900 1129 aaKnown RBP eCLIP31.7■■■□□ 2.674e-8■■■□□ 15.3
NEDD4L-225ENST00000589054 PCBP1Q15365 356 aaKnown RBP eCLIP23.68■■□□□ 1.382e-7■■■□□ 15.2
NEDD4L-225ENST00000589054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.38■■■□□ 2.938e-7■■■□□ 14.8
NEDD4L-225ENST00000589054 EFTUD2Q15029 972 aaKnown RBP eCLIP19.76■□□□□ 0.757e-7■■■□□ 14.7
NEDD4L-225ENST00000589054 SF3A3Q12874 501 aaKnown RBP eCLIP18.18■□□□□ 0.52e-6■■■□□ 14.6
NEDD4L-225ENST00000589054 NKRFO15226 690 aaKnown RBP eCLIP24.92■■□□□ 1.586e-8■■□□□ 14.5
NEDD4L-225ENST00000589054 FXR2P51116 673 aaKnown RBP eCLIP23.56■■□□□ 1.364e-10■■□□□ 14.5
NEDD4L-225ENST00000589054 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.55■□□□□ 0.723e-7■■□□□ 14.3
NEDD4L-225ENST00000589054 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.16■■□□□ 1.626e-7■■□□□ 13.9
NEDD4L-225ENST00000589054 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.7■■□□□ 1.866e-22■■□□□ 13.8
NEDD4L-225ENST00000589054 TAF15Q92804 592 aaKnown RBP eCLIP17.93■□□□□ 0.462e-6■■□□□ 13.5
NEDD4L-225ENST00000589054 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.15■□□□□ 0.822e-7■■□□□ 13.4
NEDD4L-225ENST00000589054 RBM22Q9NW64 420 aaKnown RBP eCLIP21.23■□□□□ 0.991e-6■■□□□ 13.4
NEDD4L-225ENST00000589054 PABPN1Q86U42 306 aaKnown RBP eCLIP44.77■■■■■ 4.761e-13■■□□□ 13
NEDD4L-225ENST00000589054 KHSRPQ92945 711 aaKnown RBP eCLIP24.44■■□□□ 1.54e-8■■□□□ 12.7
NEDD4L-225ENST00000589054 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.25■■□□□ 1.799e-9■■□□□ 12.3
NEDD4L-225ENST00000589054 AKAP1Q92667 903 aaKnown RBP eCLIP18.96■□□□□ 0.632e-6■■□□□ 12.1
NEDD4L-225ENST00000589054 IGF2BP3O00425 579 aaKnown RBP eCLIP26.82■■□□□ 1.884e-7■■□□□ 12.1
NEDD4L-225ENST00000589054 PPIGQ13427 754 aaKnown RBP eCLIP25.06■■□□□ 1.62e-6■■□□□ 12
NEDD4L-225ENST00000589054 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.39■■■■□ 3.261e-6■■□□□ 11.6
NEDD4L-225ENST00000589054 SF3B4Q15427 424 aaKnown RBP eCLIP19.33■□□□□ 0.684e-7■■□□□ 11.6
NEDD4L-225ENST00000589054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.42■■■□□ 2.31e-7■□□□□ 11.3
NEDD4L-225ENST00000589054 FTOQ9C0B1 505 aaKnown RBP eCLIP24.77■■□□□ 1.568e-24■□□□□ 11.3
NEDD4L-225ENST00000589054 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.96■□□□□ 0.794e-7■□□□□ 11
NEDD4L-225ENST00000589054 SMNDC1O75940 238 aaKnown RBP eCLIP19.22■□□□□ 0.675e-6■□□□□ 10.8
NEDD4L-225ENST00000589054 G3BP1Q13283 466 aaKnown RBP eCLIP26.35■■□□□ 1.811e-6■□□□□ 10.7
NEDD4L-225ENST00000589054 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.44■■□□□ 1.349e-9■□□□□ 10
NEDD4L-225ENST00000589054 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.95■■□□□ 1.741e-6■□□□□ 9.9
NEDD4L-225ENST00000589054 SFPQP23246 707 aaKnown RBP eCLIP23.9■■□□□ 1.421e-7■□□□□ 9.5
NEDD4L-225ENST00000589054 FUSP35637 526 aaKnown RBP eCLIP14.62□□□□□ -0.075e-7■□□□□ 9.2
NEDD4L-225ENST00000589054 ZC3H11AO75152 810 aaKnown RBP eCLIP23.88■■□□□ 1.412e-8■□□□□ 9.1
NEDD4L-225ENST00000589054 TIAL1Q01085 375 aaKnown RBP eCLIP20.27■□□□□ 0.842e-6■□□□□ 9
NEDD4L-225ENST00000589054 HNRNPCP07910 306 aaKnown RBP eCLIP15.39■□□□□ 0.054e-6■□□□□ 8.4
NEDD4L-225ENST00000589054 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.49■■□□□ 1.035e-16■□□□□ 8.2
NEDD4L-225ENST00000589054 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.06■□□□□ 0.967e-7■□□□□ 8.2
Retrieved 78 of 78 RNA–protein pairs in 15.8 ms