Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.092e-12■■■■■ 806.3
SF3B1O75533 PRPSAP2-209ENST00000441887 700 ntTSL 58.87□□□□□ -0.992e-27■■■■■ 620.3
SF3B1O75533 ARFGAP3-205ENST00000454099 542 ntTSL 417.03■□□□□ 0.328e-26■■■■■ 585.9
SF3B1O75533 ARFGAP3-206ENST00000493606 580 ntTSL 215.45■□□□□ 0.068e-26■■■■■ 585.9
SF3B1O75533 ARFGAP3-202ENST00000435208 501 ntTSL 38.12□□□□□ -1.118e-26■■■■■ 585.9
SF3B1O75533 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.02■□□□□ 0.791e-25■■■■■ 568
SF3B1O75533 LINC00910-205ENST00000592094 1042 ntTSL 1 (best)19.31■□□□□ 0.681e-25■■■■■ 568
SF3B1O75533 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.87□□□□□ -0.031e-25■■■■■ 568
SF3B1O75533 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC14.08□□□□□ -0.151e-25■■■■■ 568
SF3B1O75533 LINC00910-204ENST00000588654 541 ntTSL 413.17□□□□□ -0.31e-25■■■■■ 568
SF3B1O75533 LINC00910-202ENST00000586231 2890 ntTSL 2 BASIC11.78□□□□□ -0.521e-25■■■■■ 568
SF3B1O75533 RNU2-4P-201ENST00000606190 192 ntBASIC0.12□□□□□ -2.391e-25■■■■■ 568
SF3B1O75533 MARF1-206ENST00000548216 2529 ntTSL 518.83■□□□□ 0.63e-24■■■■■ 551.4
SF3B1O75533 MARF1-205ENST00000548025 5891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.593e-24■■■■■ 551.4
SF3B1O75533 MARF1-214ENST00000552553 5053 ntTSL 510.08□□□□□ -0.83e-24■■■■■ 551.4
SF3B1O75533 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC9.62□□□□□ -0.873e-24■■■■■ 551.4
SF3B1O75533 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC9.54□□□□□ -0.883e-24■■■■■ 551.4
SF3B1O75533 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.063e-24■■■■■ 551.4
SF3B1O75533 EIF6-208ENST00000462894 453 ntTSL 328.77■■■□□ 2.21e-29■■■■■ 516.9
SF3B1O75533 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.471e-29■■■■■ 516.9
SF3B1O75533 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.381e-29■■■■■ 516.9
SF3B1O75533 EIF6-207ENST00000456600 551 ntTSL 323.64■■□□□ 1.381e-29■■■■■ 516.9
SF3B1O75533 EIF6-204ENST00000415116 739 ntTSL 522.6■■□□□ 1.211e-29■■■■■ 516.9
SF3B1O75533 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.849e-23■■■■■ 516.9
SF3B1O75533 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.05■□□□□ 0.481e-29■■■■■ 516.9
SF3B1O75533 EIF6-206ENST00000447927 932 ntTSL 1 (best)17.95■□□□□ 0.461e-29■■■■■ 516.9
SF3B1O75533 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.361e-29■■■■■ 516.9
SF3B1O75533 FOXK2-208ENST00000571160 496 ntTSL 514.32□□□□□ -0.129e-23■■■■■ 516.9
SF3B1O75533 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.753e-21■■■■■ 482.5
SF3B1O75533 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.493e-21■■■■■ 482.5
SF3B1O75533 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.413e-21■■■■■ 482.5
SF3B1O75533 SGSM2-204ENST00000572841 2450 ntTSL 216.55■□□□□ 0.243e-21■■■■■ 482.5
SF3B1O75533 CRB2-203ENST00000460253 3947 ntTSL 216.38■□□□□ 0.213e-21■■■■■ 482.5
SF3B1O75533 STK36-215ENST00000486644 730 ntTSL 515.83■□□□□ 0.123e-21■■■■■ 482.5
SF3B1O75533 SGSM2-206ENST00000572925 644 ntTSL 314.26□□□□□ -0.133e-21■■■■■ 482.5
SF3B1O75533 TCEANC2-204ENST00000498272 2538 ntTSL 213.5□□□□□ -0.253e-21■■■■■ 482.5
SF3B1O75533 STK36-209ENST00000462031 582 ntTSL 213.46□□□□□ -0.253e-21■■■■■ 482.5
SF3B1O75533 SGSM2-211ENST00000574563 3410 ntTSL 2 BASIC11.76□□□□□ -0.533e-21■■■■■ 482.5
SF3B1O75533 STK36-207ENST00000440309 4721 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.63e-21■■■■■ 482.5
SF3B1O75533 STK36-204ENST00000419433 2093 ntTSL 211.01□□□□□ -0.653e-21■■■■■ 482.5
SF3B1O75533 STK36-202ENST00000392105 4821 ntTSL 1 (best) BASIC10.14□□□□□ -0.793e-21■■■■■ 482.5
SF3B1O75533 STK36-201ENST00000295709 4933 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-21■■■■■ 482.5
SF3B1O75533 CIC-205ENST00000573349 927 ntTSL 220.43■□□□□ 0.863e-6■■■■■ 449.2
SF3B1O75533 CIC-209ENST00000576505 1304 ntTSL 319.62■□□□□ 0.733e-6■■■■■ 449.2
SF3B1O75533 CIC-206ENST00000575287 846 ntTSL 317.98■□□□□ 0.473e-6■■■■■ 449.2
SF3B1O75533 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.043e-6■■■■■ 449.2
SF3B1O75533 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.811e-19■■■■■ 448
SF3B1O75533 NELFE-208ENST00000481121 1543 ntTSL 222.7■■□□□ 1.221e-19■■■■■ 448
SF3B1O75533 SLC48A1-208ENST00000551301 1070 ntTSL 222.34■■□□□ 1.171e-19■■■■■ 448
SF3B1O75533 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.131e-19■■■■■ 448
SF3B1O75533 SLC48A1-207ENST00000549243 577 ntTSL 321.5■■□□□ 1.031e-19■■■■■ 448
SF3B1O75533 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.021e-19■■■■■ 448
SF3B1O75533 NELFE-211ENST00000492185 1786 ntTSL 220.72■□□□□ 0.911e-19■■■■■ 448
SF3B1O75533 MYO9B-210ENST00000597572 660 ntTSL 518.41■□□□□ 0.541e-19■■■■■ 448
SF3B1O75533 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.421e-19■■■■■ 448
SF3B1O75533 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.411e-19■■■■■ 448
SF3B1O75533 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.261e-19■■■■■ 448
SF3B1O75533 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.59■□□□□ 0.251e-19■■■■■ 448
SF3B1O75533 UNKL-203ENST00000382757 897 ntTSL 515.81■□□□□ 0.121e-19■■■■■ 448
SF3B1O75533 POP7-202ENST00000457480 483 ntTSL 315.81■□□□□ 0.121e-19■■■■■ 448
SF3B1O75533 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.11e-19■■■■■ 448
SF3B1O75533 SGSM3-204ENST00000457767 1086 ntTSL 215.54■□□□□ 0.081e-19■■■■■ 448
SF3B1O75533 TMTC2-205ENST00000551915 3304 ntTSL 1 (best)14.41□□□□□ -0.11e-19■■■■■ 448
SF3B1O75533 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.271e-19■■■■■ 448
SF3B1O75533 NELFE-209ENST00000488426 1855 ntTSL 513.28□□□□□ -0.281e-19■■■■■ 448
SF3B1O75533 SLC48A1-202ENST00000442892 1024 ntTSL 1 (best) BASIC13.26□□□□□ -0.291e-19■■■■■ 448
SF3B1O75533 NELFE-205ENST00000441998 1075 ntAPPRIS ALT2 TSL 512.26□□□□□ -0.451e-19■■■■■ 448
SF3B1O75533 AC022639.1-203ENST00000521958 579 ntTSL 4 BASIC12.2□□□□□ -0.461e-19■■■■■ 448
SF3B1O75533 SLC48A1-206ENST00000548498 618 ntTSL 310.73□□□□□ -0.691e-19■■■■■ 448
SF3B1O75533 NRBP1-207ENST00000486701 813 ntTSL 39.17□□□□□ -0.941e-19■■■■■ 448
SF3B1O75533 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC8.88□□□□□ -0.991e-19■■■■■ 448
SF3B1O75533 TMTC2-202ENST00000546590 4527 ntTSL 1 (best)8.39□□□□□ -1.071e-19■■■■■ 448
SF3B1O75533 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC7.87□□□□□ -1.151e-19■■■■■ 448
SF3B1O75533 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC7.52□□□□□ -1.21e-19■■■■■ 448
SF3B1O75533 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.97□□□□□ -1.451e-19■■■■■ 448
SF3B1O75533 PABPC1-206ENST00000518293 608 ntTSL 33.22□□□□□ -1.891e-19■■■■■ 448
SF3B1O75533 CHURC1-FNTB-204ENST00000553743 207 ntTSL 27.73□□□□□ -1.173e-6■■■■■ 426.2
SF3B1O75533 CHURC1-FNTB-202ENST00000551823 517 ntTSL 22.97□□□□□ -1.933e-6■■■■■ 426.2
SF3B1O75533 MZT2A-204ENST00000445782 980 ntTSL 229.46■■■□□ 2.313e-18■■■■■ 413.6
SF3B1O75533 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.843e-18■■■■■ 413.6
SF3B1O75533 SIRT7-208ENST00000572350 713 ntTSL 326.25■■□□□ 1.793e-18■■■■■ 413.6
SF3B1O75533 SIRT7-204ENST00000571213 683 ntTSL 226.02■■□□□ 1.763e-18■■■■■ 413.6
SF3B1O75533 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.44■■□□□ 1.53e-18■■■■■ 413.6
SF3B1O75533 PTOV1-205ENST00000595934 1880 nt24.4■■□□□ 1.53e-18■■■■■ 413.6
SF3B1O75533 SIRT7-212ENST00000573367 711 ntTSL 224.22■■□□□ 1.473e-18■■■■■ 413.6
SF3B1O75533 SIRT7-209ENST00000572671 656 ntTSL 223.94■■□□□ 1.423e-18■■■■■ 413.6
SF3B1O75533 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.43e-18■■■■■ 413.6
SF3B1O75533 ZNF264-204ENST00000597447 681 ntTSL 323.79■■□□□ 1.43e-18■■■■■ 413.6
SF3B1O75533 SIRT7-202ENST00000536038 1883 ntTSL 223.44■■□□□ 1.343e-18■■■■■ 413.6
SF3B1O75533 SIRT7-215ENST00000574495 920 ntTSL 223.01■■□□□ 1.273e-18■■■■■ 413.6
SF3B1O75533 ZNF264-203ENST00000594126 359 ntTSL 322.94■■□□□ 1.263e-18■■■■■ 413.6
SF3B1O75533 SIRT7-219ENST00000575360 754 ntTSL 322.88■■□□□ 1.253e-18■■■■■ 413.6
SF3B1O75533 SIRT7-203ENST00000570367 685 ntTSL 222.58■■□□□ 1.213e-18■■■■■ 413.6
SF3B1O75533 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.02■■□□□ 1.123e-18■■■■■ 413.6
SF3B1O75533 ANKRD13B-208ENST00000583728 582 ntTSL 420.66■□□□□ 0.93e-18■■■■■ 413.6
SF3B1O75533 SIRT7-221ENST00000577065 874 ntTSL 320.3■□□□□ 0.843e-18■■■■■ 413.6
SF3B1O75533 SIRT7-213ENST00000573576 465 ntTSL 319.99■□□□□ 0.793e-18■■■■■ 413.6
SF3B1O75533 SIRT7-206ENST00000571832 2511 ntTSL 219.72■□□□□ 0.753e-18■■■■■ 413.6
SF3B1O75533 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.743e-18■■■■■ 413.6
SF3B1O75533 LRWD1-202ENST00000463739 1062 ntTSL 519.51■□□□□ 0.713e-18■■■■■ 413.6
Retrieved 100 of 46,956 protein–RNA pairs in 2381.5 ms