Protein–RNA interactions for Protein: Q00839

HNRNPU, Heterogeneous nuclear ribonucleoprotein U, humanhuman

Known RBP eCLIP

Length 825 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPUQ00839 SMC4-221ENST00000489573 1553 ntTSL 1 (best)29.02■■■□□ 2.242e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-209ENST00000468653 1756 ntTSL 225.62■■□□□ 1.692e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.552e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-211ENST00000469858 1971 ntTSL 224.6■■□□□ 1.532e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC21.68■■□□□ 1.062e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC14.38□□□□□ -0.112e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-213ENST00000472282 667 ntTSL 311.8□□□□□ -0.522e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-214ENST00000472991 582 ntTSL 511.8□□□□□ -0.522e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-212ENST00000470240 724 ntTSL 310.94□□□□□ -0.662e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-219ENST00000487747 637 ntTSL 58.24□□□□□ -1.092e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-227ENST00000497984 563 ntTSL 57.92□□□□□ -1.142e-22■■■■■ 68.1
HNRNPUQ00839 SMC4-208ENST00000467468 566 ntTSL 46.88□□□□□ -1.312e-22■■■■■ 68.1
HNRNPUQ00839 MIR15B-201ENST00000385045 98 ntBASIC3.53□□□□□ -1.842e-22■■■■■ 68.1
HNRNPUQ00839 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC16.59■□□□□ 0.251e-68■■■■■ 65.9
HNRNPUQ00839 PLCXD1-208ENST00000445062 555 ntTSL 426.08■■□□□ 1.771e-11■■■■■ 36.3
HNRNPUQ00839 PLCXD1-205ENST00000429181 469 ntTSL 418.89■□□□□ 0.611e-11■■■■■ 36.3
HNRNPUQ00839 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.321e-11■■■■■ 36.3
HNRNPUQ00839 MERTK-205ENST00000449344 771 ntTSL 313.13□□□□□ -0.316e-11■■■■■ 34.5
HNRNPUQ00839 ANKRD11-204ENST00000378332 1982 ntTSL 228.64■■■□□ 2.181e-10■■■■■ 33.9
HNRNPUQ00839 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.081e-10■■■■■ 33.9
HNRNPUQ00839 ANKRD11-211ENST00000566973 442 ntTSL 224.43■■□□□ 1.51e-10■■■■■ 33.9
HNRNPUQ00839 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.441e-10■■■■■ 33.9
HNRNPUQ00839 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.381e-10■■■■■ 33.9
HNRNPUQ00839 ANKRD11-215ENST00000568512 294 ntTSL 212.15□□□□□ -0.461e-10■■■■■ 33.9
HNRNPUQ00839 LRRC41-205ENST00000498402 2068 ntTSL 224.19■■□□□ 1.462e-9■■■■■ 29.3
HNRNPUQ00839 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.872e-9■■■■■ 29.3
HNRNPUQ00839 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC18.06■□□□□ 0.482e-9■■■■■ 29.3
HNRNPUQ00839 LRRC41-207ENST00000617190 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.182e-9■■■■■ 29.3
HNRNPUQ00839 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC16.59■□□□□ 0.251e-7■■■■■ 29.3
HNRNPUQ00839 MTRNR2L4-201ENST00000399974 1762 ntAPPRIS P1 BASIC14.37□□□□□ -0.119e-9■■■■■ 27.1
HNRNPUQ00839 BABAM2-205ENST00000379629 865 ntTSL 37.62□□□□□ -1.195e-8■■■■□ 25.5
HNRNPUQ00839 PRKCA-203ENST00000578063 1733 ntTSL 1 (best)24.9■■□□□ 1.588e-8■■■■□ 25.4
HNRNPUQ00839 PRKCA-201ENST00000284384 2718 ntTSL 510.64□□□□□ -0.718e-8■■■■□ 25.4
HNRNPUQ00839 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.848e-8■■■■□ 25.4
HNRNPUQ00839 ZNF275-202ENST00000370251 6320 ntTSL 2 BASIC14.86□□□□□ -0.035e-8■■■■□ 25
HNRNPUQ00839 LRMDA-201ENST00000372499 899 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.597e-8■■■■□ 24.8
HNRNPUQ00839 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC8.64□□□□□ -1.031e-11■■■■□ 24.8
HNRNPUQ00839 ZNF580-206ENST00000592881 1019 ntTSL 326.42■■□□□ 1.821e-8■■■■□ 24.6
HNRNPUQ00839 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.481e-8■■■■□ 24.6
HNRNPUQ00839 PLCXD1-211ENST00000484611 540 ntTSL 419.63■□□□□ 0.733e-7■■■■□ 24.4
HNRNPUQ00839 PLCXD1-206ENST00000430923 587 ntAPPRIS ALT2 TSL 218.71■□□□□ 0.593e-7■■■■□ 24.4
HNRNPUQ00839 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.23e-7■■■■□ 24.4
HNRNPUQ00839 HFM1-204ENST00000448819 540 ntTSL 511.4□□□□□ -0.588e-8■■■■□ 24.4
HNRNPUQ00839 HFM1-202ENST00000427444 672 ntTSL 510.18□□□□□ -0.788e-8■■■■□ 24.4
HNRNPUQ00839 HFM1-208ENST00000488023 1699 ntTSL 55.11□□□□□ -1.598e-8■■■■□ 24.4
HNRNPUQ00839 HFM1-207ENST00000481900 2020 ntTSL 54.55□□□□□ -1.688e-8■■■■□ 24.4
HNRNPUQ00839 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.18e-8■■■■□ 24.4
HNRNPUQ00839 PLXNB2-212ENST00000496720 913 ntTSL 322.36■■□□□ 1.172e-7■■■■□ 23.3
HNRNPUQ00839 PLXNB2-202ENST00000411680 704 ntTSL 221.41■■□□□ 1.022e-7■■■■□ 23.3
HNRNPUQ00839 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.62e-7■■■■□ 23.3
HNRNPUQ00839 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.562e-7■■■■□ 23.3
HNRNPUQ00839 PLXNB2-206ENST00000434732 253 ntTSL 217.45■□□□□ 0.382e-7■■■■□ 23.3
HNRNPUQ00839 AC025627.3-201ENST00000582078 182 ntBASIC1.16□□□□□ -2.224e-7■■■■□ 23.2
HNRNPUQ00839 STK40-208ENST00000482458 900 ntTSL 330.51■■■□□ 2.475e-8■■■■□ 23.1
HNRNPUQ00839 STK40-205ENST00000460017 511 ntTSL 523.48■■□□□ 1.355e-8■■■■□ 23.1
HNRNPUQ00839 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.115e-8■■■■□ 23.1
HNRNPUQ00839 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.955e-8■■■■□ 23.1
HNRNPUQ00839 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.565e-8■■■■□ 23.1
HNRNPUQ00839 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.446e-7■■■■□ 23
HNRNPUQ00839 FREM1-201ENST00000380875 6126 ntTSL 1 (best)12.25□□□□□ -0.456e-7■■■■□ 23
HNRNPUQ00839 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.536e-7■■■■□ 23
HNRNPUQ00839 MCEE-201ENST00000244217 835 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.095e-7■■■■□ 22.9
HNRNPUQ00839 MCEE-203ENST00000462609 633 ntTSL 310.02□□□□□ -0.815e-7■■■■□ 22.9
HNRNPUQ00839 MCEE-202ENST00000413592 523 ntTSL 29.58□□□□□ -0.885e-7■■■■□ 22.9
HNRNPUQ00839 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.794e-7■■■■□ 22.8
HNRNPUQ00839 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.614e-7■■■■□ 22.8
HNRNPUQ00839 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.544e-7■■■■□ 22.8
HNRNPUQ00839 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC18.53■□□□□ 0.561e-10■■■■□ 22.7
HNRNPUQ00839 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC8.36□□□□□ -1.076e-11■■■■□ 22.4
HNRNPUQ00839 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC28.73■■■□□ 2.196e-7■■■■□ 22.2
HNRNPUQ00839 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.566e-7■■■■□ 22.2
HNRNPUQ00839 FAM120B-201ENST00000476287 5155 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.446e-7■■■■□ 22.2
HNRNPUQ00839 FAM120B-203ENST00000537664 3212 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.66e-7■■■■□ 22.2
HNRNPUQ00839 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.781e-7■■■■□ 21.9
HNRNPUQ00839 CUX1-202ENST00000292538 2930 ntTSL 1 (best) BASIC15.88■□□□□ 0.131e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-210ENST00000497815 947 ntTSL 215.58■□□□□ 0.081e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC15.38■□□□□ 0.051e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-204ENST00000393824 2331 ntTSL 2 BASIC15.17■□□□□ 0.021e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-205ENST00000425244 2776 ntTSL 2 BASIC14.79□□□□□ -0.041e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-221ENST00000622516 2990 ntTSL 1 (best) BASIC14.73□□□□□ -0.051e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC13.19□□□□□ -0.31e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.361e-6■■■■□ 21.8
HNRNPUQ00839 CUX1-220ENST00000607092 559 ntTSL 37.49□□□□□ -1.211e-6■■■■□ 21.8
HNRNPUQ00839 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.651e-6■■■■□ 21.8
HNRNPUQ00839 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC18.23■□□□□ 0.511e-6■■■■□ 21.8
HNRNPUQ00839 LGR5-206ENST00000550851 4095 ntTSL 216.06■□□□□ 0.161e-6■■■■□ 21.8
HNRNPUQ00839 LGR5-203ENST00000540815 2800 ntTSL 1 (best) BASIC15.53■□□□□ 0.081e-6■■■■□ 21.8
HNRNPUQ00839 EPB41L1-213ENST00000447825 896 ntTSL 329.99■■■□□ 2.396e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-204ENST00000373945 763 ntTSL 223.76■■□□□ 1.396e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-207ENST00000406771 652 ntTSL 521.07■□□□□ 0.966e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-209ENST00000430276 896 ntTSL 519.01■□□□□ 0.636e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.596e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-206ENST00000373950 3631 ntTSL 5 BASIC17.91■□□□□ 0.466e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-212ENST00000441639 5967 ntTSL 5 BASIC16.9■□□□□ 0.36e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-215ENST00000452261 769 ntTSL 516.04■□□□□ 0.166e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-210ENST00000432589 210 ntTSL 315.54■□□□□ 0.086e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-218ENST00000628415 3287 ntTSL 2 BASIC15.43■□□□□ 0.066e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-205ENST00000373946 6327 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.016e-7■■■■□ 21.7
HNRNPUQ00839 EPB41L1-208ENST00000427533 460 ntTSL 312.06□□□□□ -0.486e-7■■■■□ 21.7
Retrieved 100 of 2,288 protein–RNA pairs in 16.7 ms