Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC9.8□□□□□ -0.845e-254■■■■■ 2286.1
LSM11P83369 C12orf57-203ENST00000538392 979 ntTSL 216.28■□□□□ 0.22e-154■■■■■ 1949.4
LSM11P83369 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13□□□□□ -0.332e-154■■■■■ 1949.4
LSM11P83369 C12orf57-207ENST00000545581 556 ntTSL 38.1□□□□□ -1.112e-154■■■■■ 1949.4
LSM11P83369 C12orf57-205ENST00000542222 640 ntTSL 27.99□□□□□ -1.132e-154■■■■■ 1949.4
LSM11P83369 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.114e-6■■■■■ 835.8
LSM11P83369 GMPR-203ENST00000543191 675 ntTSL 29.17□□□□□ -0.944e-6■■■■■ 835.8
LSM11P83369 GAD1-206ENST00000445006 639 ntTSL 413.93□□□□□ -0.184e-82■■■■■ 483.6
LSM11P83369 GAD1-207ENST00000454603 529 ntTSL 412.93□□□□□ -0.344e-82■■■■■ 483.6
LSM11P83369 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.37□□□□□ -0.434e-82■■■■■ 483.6
LSM11P83369 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC12.09□□□□□ -0.474e-82■■■■■ 483.6
LSM11P83369 GAD1-208ENST00000455008 571 ntTSL 411.03□□□□□ -0.644e-82■■■■■ 483.6
LSM11P83369 GAD1-205ENST00000429023 812 ntTSL 510.88□□□□□ -0.674e-82■■■■■ 483.6
LSM11P83369 GAD1-209ENST00000456864 556 ntTSL 410.62□□□□□ -0.714e-82■■■■■ 483.6
LSM11P83369 GAD1-202ENST00000358196 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.84e-82■■■■■ 483.6
LSM11P83369 GAD1-217ENST00000625689 3700 ntTSL 5 BASIC9.07□□□□□ -0.964e-82■■■■■ 483.6
LSM11P83369 GAD1-216ENST00000493875 3988 ntTSL 1 (best)8.78□□□□□ -14e-82■■■■■ 483.6
LSM11P83369 GAD1-204ENST00000414527 1780 ntTSL 58.73□□□□□ -1.014e-82■■■■■ 483.6
LSM11P83369 PPP4R2-203ENST00000470976 1033 ntTSL 223.88■■□□□ 1.411e-45■■■■■ 289.8
LSM11P83369 PPP4R2-206ENST00000488810 877 ntTSL 523.46■■□□□ 1.351e-45■■■■■ 289.8
LSM11P83369 PPP4R2-205ENST00000482242 771 ntTSL 323.17■■□□□ 1.31e-45■■■■■ 289.8
LSM11P83369 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.411e-45■■■■■ 289.8
LSM11P83369 PPP4R2-204ENST00000476505 323 ntTSL 58.53□□□□□ -1.041e-45■■■■■ 289.8
LSM11P83369 SMC4-221ENST00000489573 1553 ntTSL 1 (best)19.78■□□□□ 0.767e-97■■■■■ 245.7
LSM11P83369 SMC4-209ENST00000468653 1756 ntTSL 217.45■□□□□ 0.387e-97■■■■■ 245.7
LSM11P83369 SMC4-211ENST00000469858 1971 ntTSL 216.76■□□□□ 0.277e-97■■■■■ 245.7
LSM11P83369 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.167e-97■■■■■ 245.7
LSM11P83369 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.16□□□□□ -0.147e-97■■■■■ 245.7
LSM11P83369 SMC4-219ENST00000487747 637 ntTSL 512.91□□□□□ -0.347e-97■■■■■ 245.7
LSM11P83369 SMC4-227ENST00000497984 563 ntTSL 512.58□□□□□ -0.47e-97■■■■■ 245.7
LSM11P83369 SMC4-213ENST00000472282 667 ntTSL 312.34□□□□□ -0.437e-97■■■■■ 245.7
LSM11P83369 SMC4-214ENST00000472991 582 ntTSL 512.16□□□□□ -0.467e-97■■■■■ 245.7
LSM11P83369 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.577e-97■■■■■ 245.7
LSM11P83369 SMC4-212ENST00000470240 724 ntTSL 310.42□□□□□ -0.747e-97■■■■■ 245.7
LSM11P83369 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC9.82□□□□□ -0.847e-97■■■■■ 245.7
LSM11P83369 SMC4-208ENST00000467468 566 ntTSL 49.52□□□□□ -0.897e-97■■■■■ 245.7
LSM11P83369 MIR15B-201ENST00000385045 98 ntBASIC5.97□□□□□ -1.457e-97■■■■■ 245.7
LSM11P83369 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC12.97□□□□□ -0.336e-9■■■■■ 169.2
LSM11P83369 PPIL4-201ENST00000253329 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.856e-9■■■■■ 169.2
LSM11P83369 SP140-213ENST00000543928 640 ntTSL 212.16□□□□□ -0.466e-26■■■■■ 152.8
LSM11P83369 SP140-208ENST00000473711 644 ntTSL 211.72□□□□□ -0.536e-26■■■■■ 152.8
LSM11P83369 SP140-202ENST00000373645 814 ntTSL 1 (best) BASIC8.55□□□□□ -1.046e-26■■■■■ 152.8
LSM11P83369 SP140-204ENST00000417495 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.086e-26■■■■■ 152.8
LSM11P83369 SP140-201ENST00000343805 2910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.096e-26■■■■■ 152.8
LSM11P83369 SP140-207ENST00000456542 580 ntTSL 47.47□□□□□ -1.216e-26■■■■■ 152.8
LSM11P83369 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC7.39□□□□□ -1.236e-26■■■■■ 152.8
LSM11P83369 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.276e-26■■■■■ 152.8
LSM11P83369 CCDC26-203ENST00000523151 1496 ntTSL 1 (best)13.68□□□□□ -0.227e-7■■■■■ 146.9
LSM11P83369 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC9.64□□□□□ -0.877e-7■■■■■ 146.9
LSM11P83369 CCDC26-202ENST00000520048 904 ntTSL 38.31□□□□□ -1.087e-7■■■■■ 146.9
LSM11P83369 RNU7-10P-201ENST00000607194 63 ntBASIC3.11□□□□□ -1.912e-14■■■■■ 142.5
LSM11P83369 HIST1H2BC-202ENST00000396984 571 ntAPPRIS P1 BASIC9.88□□□□□ -0.831e-32■■■■■ 134.3
LSM11P83369 HIST1H2BC-201ENST00000314332 659 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.821e-32■■■■■ 129.3
LSM11P83369 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.432e-25■■■■■ 125.7
LSM11P83369 GTF2A1-201ENST00000298173 1677 ntTSL 222.49■■□□□ 1.195e-28■■■■■ 119.6
LSM11P83369 GTF2A1-204ENST00000556268 864 ntTSL 515.48■□□□□ 0.075e-28■■■■■ 119.6
LSM11P83369 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC11.31□□□□□ -0.65e-28■■■■■ 119.6
LSM11P83369 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.15e-28■■■■■ 119.6
LSM11P83369 EPHB1-204ENST00000467708 569 ntTSL 412.79□□□□□ -0.364e-8■■■■■ 109.4
LSM11P83369 EPHB1-202ENST00000460895 564 ntTSL 38.62□□□□□ -1.034e-8■■■■■ 109.4
LSM11P83369 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.065e-13■■■■■ 95
LSM11P83369 TFRC-204ENST00000421258 524 ntTSL 311.39□□□□□ -0.595e-13■■■■■ 95
LSM11P83369 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.055e-13■■■■■ 95
LSM11P83369 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.285e-13■■■■■ 95
LSM11P83369 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.181e-22■■■■■ 94.2
LSM11P83369 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.311e-8■■■■■ 91.9
LSM11P83369 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.231e-8■■■■■ 91.9
LSM11P83369 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.62□□□□□ -0.231e-8■■■■■ 91.9
LSM11P83369 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.491e-8■■■■■ 91.9
LSM11P83369 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC11.19□□□□□ -0.621e-8■■■■■ 91.9
LSM11P83369 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.78□□□□□ -1.481e-8■■■■■ 91.9
LSM11P83369 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.61e-8■■■■■ 91.9
LSM11P83369 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.691e-8■■■■■ 91.9
LSM11P83369 DHRS2-208ENST00000556729 5318 ntTSL 214.59□□□□□ -0.071e-33■■■■■ 89.8
LSM11P83369 DHRS2-205ENST00000553896 1352 ntTSL 1 (best)17.98■□□□□ 0.476e-51■■■■■ 89.7
LSM11P83369 DHRS2-203ENST00000432832 834 ntTSL 217.95■□□□□ 0.466e-51■■■■■ 89.7
LSM11P83369 RNF115-202ENST00000582693 9117 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.683e-20■■■■■ 86.8
LSM11P83369 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.118e-9■■■■■ 84.7
LSM11P83369 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.368e-9■■■■■ 84.7
LSM11P83369 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.418e-9■■■■■ 84.7
LSM11P83369 COG5-209ENST00000484237 574 ntTSL 49.54□□□□□ -0.888e-9■■■■■ 84.7
LSM11P83369 COG5-208ENST00000475638 592 ntTSL 39.25□□□□□ -0.938e-9■■■■■ 84.7
LSM11P83369 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.668e-34■■■■■ 84.6
LSM11P83369 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.278e-34■■■■■ 84.6
LSM11P83369 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)14.33□□□□□ -0.128e-34■■■■■ 84.6
LSM11P83369 SFI1-228ENST00000524296 2108 ntTSL 514.75□□□□□ -0.058e-18■■■■■ 84.2
LSM11P83369 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.37□□□□□ -0.118e-18■■■■■ 84.2
LSM11P83369 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.38e-18■■■■■ 84.2
LSM11P83369 SFI1-202ENST00000382162 5250 ntTSL 211.75□□□□□ -0.538e-18■■■■■ 84.2
LSM11P83369 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.548e-18■■■■■ 84.2
LSM11P83369 SFI1-211ENST00000450787 448 ntTSL 511.35□□□□□ -0.598e-18■■■■■ 84.2
LSM11P83369 SFI1-203ENST00000400288 4002 ntAPPRIS P4 TSL 2 BASIC10.86□□□□□ -0.678e-18■■■■■ 84.2
LSM11P83369 SFI1-205ENST00000411518 656 ntTSL 310.76□□□□□ -0.698e-18■■■■■ 84.2
LSM11P83369 SFI1-204ENST00000400289 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.828e-18■■■■■ 84.2
LSM11P83369 SFI1-224ENST00000486708 651 ntTSL 26.57□□□□□ -1.368e-18■■■■■ 84.2
LSM11P83369 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.66□□□□□ -1.58e-18■■■■■ 84.2
LSM11P83369 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.7■□□□□ 0.19e-47■■■■■ 83.9
LSM11P83369 TP53BP1-210ENST00000450115 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.913e-19■■■■■ 82.9
LSM11P83369 TP53BP1-216ENST00000572085 5574 ntTSL 28.91□□□□□ -0.983e-19■■■■■ 82.9
LSM11P83369 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.163e-19■■■■■ 82.9
Retrieved 100 of 11,495 protein–RNA pairs in 46.1 ms