Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DIMT1-205ENST00000514911 1034 ntTSL 529.65■■■□□ 2.343e-7■■■■■ 117
YBX3P16989 DIMT1-203ENST00000509182 961 ntTSL 229.65■■■□□ 2.343e-7■■■■■ 117
YBX3P16989 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC25.87■■□□□ 1.733e-7■■■■■ 117
YBX3P16989 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.363e-7■■■■■ 117
YBX3P16989 GAPDHP1-201ENST00000452570 1005 ntBASIC15.68■□□□□ 0.12e-6■■■■■ 108.5
YBX3P16989 RPL31-202ENST00000409000 641 ntTSL 2 BASIC8.64□□□□□ -1.033e-9■■■■■ 90.3
YBX3P16989 FTH1P8-201ENST00000498161 514 ntBASIC6.78□□□□□ -1.325e-27■■■■■ 81.5
YBX3P16989 RPS10P28-201ENST00000480396 498 ntBASIC10.39□□□□□ -0.753e-6■■■■■ 79.8
YBX3P16989 SRPRA-207ENST00000532268 829 ntTSL 211.63□□□□□ -0.554e-11■■■■■ 74.4
YBX3P16989 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.82■□□□□ 0.284e-7■■■■■ 69.9
YBX3P16989 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.044e-7■■■■■ 69.9
YBX3P16989 AP001347.1-201ENST00000428809 1332 ntTSL 1 (best) BASIC10.84□□□□□ -0.675e-8■■■■■ 67.4
YBX3P16989 AP001347.1-202ENST00000432621 1084 ntTSL 1 (best)10.39□□□□□ -0.755e-8■■■■■ 67.4
YBX3P16989 RPS4XP6-201ENST00000477670 797 ntBASIC6.61□□□□□ -1.358e-22■■■■■ 65.7
YBX3P16989 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.388e-13■■■■■ 63.5
YBX3P16989 LINC01029-201ENST00000577408 1249 nt20.87■□□□□ 0.933e-9■■■■■ 59.9
YBX3P16989 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.68■□□□□ 0.423e-9■■■■■ 59.9
YBX3P16989 ZNF90-202ENST00000469078 1918 ntTSL 514.66□□□□□ -0.064e-12■■■■■ 54.2
YBX3P16989 AC011447.1-201ENST00000497576 441 ntBASIC13.67□□□□□ -0.224e-12■■■■■ 54.2
YBX3P16989 ZNF90-204ENST00000474284 1724 ntTSL 512.85□□□□□ -0.354e-12■■■■■ 54.2
YBX3P16989 FAM171A2-202ENST00000588067 964 ntTSL 532.19■■■□□ 2.742e-15■■■■■ 53.7
YBX3P16989 FAM171A2-204ENST00000592560 758 ntTSL 229.04■■■□□ 2.242e-15■■■■■ 53.7
YBX3P16989 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.062e-15■■■■■ 53.7
YBX3P16989 FAM171A2-203ENST00000589407 1066 ntTSL 319.54■□□□□ 0.722e-15■■■■■ 53.7
YBX3P16989 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.2■■■□□ 2.592e-16■■■■■ 53.6
YBX3P16989 RALB-204ENST00000431732 767 ntTSL 530.97■■■□□ 2.552e-16■■■■■ 53.6
YBX3P16989 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.42e-16■■■■■ 53.6
YBX3P16989 RALB-206ENST00000449649 667 ntTSL 521.55■■□□□ 1.042e-16■■■■■ 53.6
YBX3P16989 RALB-202ENST00000412383 981 ntTSL 320.84■□□□□ 0.932e-16■■■■■ 53.6
YBX3P16989 RALB-205ENST00000447591 558 ntTSL 419.33■□□□□ 0.682e-16■■■■■ 53.6
YBX3P16989 CCT3-213ENST00000489870 827 ntTSL 212.86□□□□□ -0.355e-27■■■■■ 53.3
YBX3P16989 AL356535.1-201ENST00000440335 398 ntBASIC4.22□□□□□ -1.731e-14■■■■■ 51.9
YBX3P16989 PHC2-212ENST00000493483 760 ntTSL 330.31■■■□□ 2.444e-10■■■■■ 51.8
YBX3P16989 PHC2-208ENST00000473158 523 ntTSL 319.13■□□□□ 0.654e-10■■■■■ 51.8
YBX3P16989 PHC2-211ENST00000486897 547 ntTSL 511.97□□□□□ -0.494e-10■■■■■ 51.8
YBX3P16989 AC104619.3-201ENST00000509116 1387 ntBASIC10.51□□□□□ -0.732e-27■■■■■ 51.7
YBX3P16989 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.542e-8■■■■■ 51.7
YBX3P16989 RPL31-201ENST00000264258 1865 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.582e-8■■■■■ 51.7
YBX3P16989 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC10.7□□□□□ -0.72e-8■■■■■ 51.7
YBX3P16989 RPL31-204ENST00000409038 817 ntTSL 2 BASIC8.46□□□□□ -1.062e-8■■■■■ 51.7
YBX3P16989 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC8.12□□□□□ -1.112e-8■■■■■ 51.7
YBX3P16989 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC7.25□□□□□ -1.252e-8■■■■■ 51.7
YBX3P16989 DNAJA1-203ENST00000495015 604 ntTSL 310.23□□□□□ -0.772e-7■■■■■ 51.6
YBX3P16989 MED30-204ENST00000522839 476 ntTSL 1 (best) BASIC11.82□□□□□ -0.522e-15■■■■■ 51.3
YBX3P16989 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.91□□□□□ -1.39e-8■■■■■ 50
YBX3P16989 NCBP1-201ENST00000375130 728 ntTSL 35.19□□□□□ -1.581e-7■■■■■ 49.3
YBX3P16989 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.215e-7■■■■■ 48.2
YBX3P16989 PRPF40A-203ENST00000448428 490 ntTSL 516.76■□□□□ 0.271e-8■■■■■ 47.2
YBX3P16989 PRPF40A-205ENST00000467114 546 ntTSL 48.43□□□□□ -1.061e-8■■■■■ 47.2
YBX3P16989 CARM1-206ENST00000588947 468 ntTSL 540.98■■■■■ 4.154e-21■■■■■ 46.8
YBX3P16989 CARM1-208ENST00000590039 596 ntTSL 516.58■□□□□ 0.244e-21■■■■■ 46.8
YBX3P16989 CARM1-207ENST00000589693 601 ntTSL 514.89□□□□□ -0.034e-21■■■■■ 46.8
YBX3P16989 RALB-207ENST00000470417 1931 ntTSL 327.08■■□□□ 1.931e-7■■■■■ 46.2
YBX3P16989 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.451e-7■■■■■ 46.2
YBX3P16989 Y_RNA.548-201ENST00000384656 105 ntBASIC6.55□□□□□ -1.362e-16■■■■■ 46
YBX3P16989 SLC2A9-206ENST00000505104 1659 ntTSL 1 (best)20.48■□□□□ 0.872e-9■■■■■ 45.6
YBX3P16989 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.462e-9■■■■■ 45.6
YBX3P16989 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.372e-9■■■■■ 45.6
YBX3P16989 SLC2A9-208ENST00000506583 1927 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.112e-9■■■■■ 45.6
YBX3P16989 SLC2A9-213ENST00000513129 738 ntTSL 312.39□□□□□ -0.432e-9■■■■■ 45.6
YBX3P16989 PISD-215ENST00000479851 655 ntTSL 327.18■■□□□ 1.948e-15■■■■■ 45.2
YBX3P16989 PISD-205ENST00000429683 609 ntTSL 321.15■□□□□ 0.988e-15■■■■■ 45.2
YBX3P16989 PISD-206ENST00000431201 460 ntTSL 421.15■□□□□ 0.988e-15■■■■■ 45.2
YBX3P16989 PISD-213ENST00000474017 1760 ntTSL 520.54■□□□□ 0.888e-15■■■■■ 45.2
YBX3P16989 PISD-217ENST00000491342 692 ntTSL 519.96■□□□□ 0.798e-15■■■■■ 45.2
YBX3P16989 PISD-216ENST00000486675 837 ntTSL 318.34■□□□□ 0.538e-15■■■■■ 45.2
YBX3P16989 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.198e-15■■■■■ 45.2
YBX3P16989 PISD-207ENST00000435900 1723 ntTSL 513.41□□□□□ -0.268e-15■■■■■ 45.2
YBX3P16989 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.482e-10■■■■■ 44.8
YBX3P16989 BLMH-202ENST00000577290 586 ntTSL 420.87■□□□□ 0.933e-12■■■■■ 44.4
YBX3P16989 BLMH-212ENST00000582749 769 ntTSL 219.78■□□□□ 0.763e-12■■■■■ 44.4
YBX3P16989 BLMH-209ENST00000580709 561 ntTSL 417.64■□□□□ 0.413e-12■■■■■ 44.4
YBX3P16989 BLMH-204ENST00000577623 823 ntTSL 516.72■□□□□ 0.273e-12■■■■■ 44.4
YBX3P16989 Y_RNA.7-201ENST00000362352 102 ntBASIC4.29□□□□□ -1.723e-29■■■■■ 44.2
YBX3P16989 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.372e-8■■■■■ 43.4
YBX3P16989 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.12■□□□□ 0.652e-8■■■■■ 43.4
YBX3P16989 HDLBP-223ENST00000449864 529 ntTSL 520.84■□□□□ 0.935e-12■■■■■ 43.2
YBX3P16989 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.97■■□□□ 1.271e-13■■■■■ 42.9
YBX3P16989 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.661e-13■■■■■ 42.9
YBX3P16989 PHC2-206ENST00000467894 1466 ntTSL 529.56■■■□□ 2.328e-9■■■■■ 42.8
YBX3P16989 PRPF40A-211ENST00000493468 1043 ntTSL 1 (best)20.36■□□□□ 0.851e-8■■■■■ 42.6
YBX3P16989 PRPF40A-201ENST00000354363 1622 ntTSL 219.8■□□□□ 0.761e-8■■■■■ 42.6
YBX3P16989 PRPF40A-212ENST00000545856 1358 ntTSL 1 (best)19.32■□□□□ 0.681e-8■■■■■ 42.6
YBX3P16989 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.061e-323■■■■■ 41.7
YBX3P16989 HACD3-204ENST00000562832 789 ntTSL 54.73□□□□□ -1.651e-6■■■■■ 41.6
YBX3P16989 HACD3-208ENST00000566239 393 ntTSL 218.07■□□□□ 0.486e-7■■■■■ 40.8
YBX3P16989 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.36e-7■■■■■ 40.5
YBX3P16989 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.5■□□□□ 0.236e-7■■■■■ 40.5
YBX3P16989 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.226e-7■■■■■ 40.5
YBX3P16989 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.286e-7■■■■■ 40.5
YBX3P16989 BRD7-203ENST00000401491 1338 ntTSL 536.48■■■■□ 3.434e-12■■■■■ 40.5
YBX3P16989 BRD7-206ENST00000567826 740 ntTSL 536.32■■■■□ 3.44e-12■■■■■ 40.5
YBX3P16989 CCDC57-214ENST00000582040 330 ntTSL 319.73■□□□□ 0.753e-7■■■■■ 40.2
YBX3P16989 CCDC57-207ENST00000419322 2829 ntAPPRIS ALT2 TSL 515.3■□□□□ 0.043e-7■■■■■ 40.2
YBX3P16989 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.243e-7■■■■■ 40.2
YBX3P16989 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.243e-7■■■■■ 40.2
YBX3P16989 CCDC57-205ENST00000392346 2964 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.373e-7■■■■■ 40.2
YBX3P16989 SUPT4H1-206ENST00000581204 539 ntTSL 211.61□□□□□ -0.558e-11■■■■■ 40.1
YBX3P16989 TRAP1-207ENST00000571804 781 ntTSL 530.09■■■□□ 2.413e-12■■■■■ 39.8
YBX3P16989 TRAP1-215ENST00000576106 555 ntTSL 430■■■□□ 2.393e-12■■■■■ 39.8
Retrieved 100 of 29,075 protein–RNA pairs in 95.7 ms