Protein–RNA interactions for Protein: P52298

NCBP2, Nuclear cap-binding protein subunit 2, humanhuman

Known RBP eCLIP

Length 156 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP2P52298 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC11.84□□□□□ -0.511e-17■■■■■ 176.9
NCBP2P52298 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.243e-31■■■■■ 162.9
NCBP2P52298 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.343e-31■■■■■ 162.9
NCBP2P52298 SYCP2L-202ENST00000341041 3069 ntTSL 211.33□□□□□ -0.63e-31■■■■■ 162.9
NCBP2P52298 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.396e-34■■■■■ 154.9
NCBP2P52298 SMC4-212ENST00000470240 724 ntTSL 37.57□□□□□ -1.26e-34■■■■■ 154.9
NCBP2P52298 SMC4-227ENST00000497984 563 ntTSL 51.68□□□□□ -2.146e-34■■■■■ 154.9
NCBP2P52298 SMC4-219ENST00000487747 637 ntTSL 51.41□□□□□ -2.186e-34■■■■■ 154.9
NCBP2P52298 MIR15B-201ENST00000385045 98 ntBASIC0.72□□□□□ -2.296e-34■■■■■ 154.9
NCBP2P52298 SNORD3B-1-201ENST00000577988 758 ntBASIC12.87□□□□□ -0.356e-29■■■■■ 103.3
NCBP2P52298 SNORD3B-1-203ENST00000631292 217 nt10.4□□□□□ -0.746e-29■■■■■ 103.3
NCBP2P52298 SNORD3B-1-202ENST00000617128 218 nt10.37□□□□□ -0.756e-29■■■■■ 103.3
NCBP2P52298 RPS8-208ENST00000497035 694 ntTSL 313.8□□□□□ -0.24e-22■■■■■ 77
NCBP2P52298 RPS8-204ENST00000470475 981 ntTSL 213.34□□□□□ -0.274e-22■■■■■ 77
NCBP2P52298 RPS8-202ENST00000396651 881 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.754e-22■■■■■ 77
NCBP2P52298 RPS8-201ENST00000372209 685 ntTSL 2 BASIC9.76□□□□□ -0.854e-22■■■■■ 77
NCBP2P52298 SMC4-221ENST00000489573 1553 ntTSL 1 (best)20.42■□□□□ 0.862e-17■■■■■ 76.5
NCBP2P52298 SMC4-209ENST00000468653 1756 ntTSL 217.94■□□□□ 0.462e-17■■■■■ 76.5
NCBP2P52298 SMC4-211ENST00000469858 1971 ntTSL 217.15■□□□□ 0.342e-17■■■■■ 76.5
NCBP2P52298 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.24■□□□□ 0.032e-17■■■■■ 76.5
NCBP2P52298 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.412e-17■■■■■ 76.5
NCBP2P52298 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC9.61□□□□□ -0.872e-17■■■■■ 76.5
NCBP2P52298 SMC4-214ENST00000472991 582 ntTSL 58.44□□□□□ -1.062e-17■■■■■ 76.5
NCBP2P52298 SMC4-213ENST00000472282 667 ntTSL 38.44□□□□□ -1.062e-17■■■■■ 76.5
NCBP2P52298 SMC4-208ENST00000467468 566 ntTSL 42.9□□□□□ -1.952e-17■■■■■ 76.5
NCBP2P52298 AL109615.2-201ENST00000455005 1608 ntTSL 1 (best) BASIC12.06□□□□□ -0.481e-22■■■■■ 75.5
NCBP2P52298 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.7■□□□□ 0.423e-18■■■■■ 75.2
NCBP2P52298 AL390728.4-204ENST00000606454 660 ntTSL 314.02□□□□□ -0.173e-18■■■■■ 75.2
NCBP2P52298 AL390728.4-203ENST00000606212 637 ntTSL 312.56□□□□□ -0.43e-18■■■■■ 75.2
NCBP2P52298 AL390728.4-202ENST00000606173 430 ntTSL 3 BASIC10.98□□□□□ -0.653e-18■■■■■ 75.2
NCBP2P52298 RPS8-207ENST00000485390 1115 ntTSL 1 (best)18.77■□□□□ 0.68e-22■■■■■ 72.9
NCBP2P52298 HS1BP3-206ENST00000446825 841 ntTSL 313.03□□□□□ -0.325e-19■■■■■ 72.3
NCBP2P52298 HS1BP3-204ENST00000415264 414 ntTSL 310.91□□□□□ -0.665e-19■■■■■ 72.3
NCBP2P52298 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.624e-19■■■■■ 71.7
NCBP2P52298 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.81■□□□□ 0.64e-19■■■■■ 71.7
NCBP2P52298 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.64■□□□□ 0.094e-19■■■■■ 71.7
NCBP2P52298 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.134e-19■■■■■ 71.7
NCBP2P52298 TMEM41B-201ENST00000299596 1443 ntTSL 1 (best)12.63□□□□□ -0.394e-19■■■■■ 71.7
NCBP2P52298 TMEM41B-202ENST00000524543 3848 ntTSL 210.81□□□□□ -0.684e-19■■■■■ 71.7
NCBP2P52298 RN7SL2-201ENST00000490232 300 ntBASIC11.76□□□□□ -0.537e-64■■■■■ 69.3
NCBP2P52298 AL627171.2-202ENST00000634923 923 ntTSL 5 BASIC8.95□□□□□ -0.987e-64■■■■■ 69.3
NCBP2P52298 AL627171.2-201ENST00000635177 1090 ntTSL 5 BASIC8.03□□□□□ -1.127e-64■■■■■ 69.3
NCBP2P52298 THUMPD3-AS1-213ENST00000520629 415 ntTSL 314.2□□□□□ -0.143e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-206ENST00000489616 583 ntTSL 214.03□□□□□ -0.163e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.5□□□□□ -0.253e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.23□□□□□ -0.293e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-205ENST00000481221 683 ntTSL 3 BASIC7.51□□□□□ -1.213e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.51□□□□□ -1.693e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-218ENST00000522525 1867 ntTSL 1 (best)4.39□□□□□ -1.713e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-214ENST00000521267 851 ntTSL 34.1□□□□□ -1.753e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.1□□□□□ -1.753e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-201ENST00000467069 667 ntTSL 53.66□□□□□ -1.823e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-207ENST00000494680 544 ntTSL 53.45□□□□□ -1.863e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-219ENST00000523354 459 ntTSL 23.21□□□□□ -1.93e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-217ENST00000522221 979 ntTSL 23.04□□□□□ -1.923e-9■■■■■ 68.6
NCBP2P52298 THUMPD3-AS1-211ENST00000520396 550 ntTSL 32.82□□□□□ -1.963e-9■■■■■ 68.6
NCBP2P52298 SNHG19-201ENST00000563192 342 ntTSL 2 BASIC7.83□□□□□ -1.164e-17■■■■■ 60.6
NCBP2P52298 SPOPL-203ENST00000430968 558 ntTSL 522.43■■□□□ 1.183e-25■■■■■ 57.8
NCBP2P52298 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.483e-25■■■■■ 57.8
NCBP2P52298 THEM7P-201ENST00000419556 672 ntBASIC5.7□□□□□ -1.52e-12■■■■■ 57.4
NCBP2P52298 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.961e-8■■■■■ 56.3
NCBP2P52298 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.841e-8■■■■■ 56.3
NCBP2P52298 PSPH-204ENST00000416592 739 ntTSL 514.84□□□□□ -0.031e-8■■■■■ 56.3
NCBP2P52298 PSPH-206ENST00000421312 633 ntTSL 513.69□□□□□ -0.221e-8■■■■■ 56.3
NCBP2P52298 PSPH-210ENST00000437355 1409 ntTSL 512.85□□□□□ -0.351e-8■■■■■ 56.3
NCBP2P52298 PSPH-203ENST00000413218 539 ntTSL 412.73□□□□□ -0.371e-8■■■■■ 56.3
NCBP2P52298 PSPH-208ENST00000424596 555 ntTSL 412.33□□□□□ -0.441e-8■■■■■ 56.3
NCBP2P52298 RNU6-9-201ENST00000384776 107 ntBASIC1.58□□□□□ -2.164e-51■■■■■ 55.3
NCBP2P52298 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC11.9□□□□□ -0.52e-10■■■■■ 54.6
NCBP2P52298 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.17□□□□□ -0.31e-43■■■■■ 53.4
NCBP2P52298 SNHG25-201ENST00000580828 106 ntTSL 211.12□□□□□ -0.631e-43■■■■■ 53.4
NCBP2P52298 FRYL-218ENST00000514783 2031 ntTSL 1 (best)14.75□□□□□ -0.056e-12■■■■■ 53.3
NCBP2P52298 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC7.36□□□□□ -1.236e-12■■■■■ 53.3
NCBP2P52298 FRYL-212ENST00000509886 692 ntTSL 1 (best)3.23□□□□□ -1.896e-12■■■■■ 53.3
NCBP2P52298 FRYL-207ENST00000505437 443 ntTSL 31.95□□□□□ -2.16e-12■■■■■ 53.3
NCBP2P52298 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.361e-15■■■■■ 53
NCBP2P52298 IVNS1ABP-204ENST00000459929 3657 ntTSL 512.23□□□□□ -0.451e-15■■■■■ 53
NCBP2P52298 SCLY-219ENST00000497256 458 ntTSL 221.13■□□□□ 0.971e-28■■■■■ 50.8
NCBP2P52298 SCLY-211ENST00000443532 968 ntTSL 520.66■□□□□ 0.91e-28■■■■■ 50.8
NCBP2P52298 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.761e-28■■■■■ 50.8
NCBP2P52298 SCLY-212ENST00000446202 548 ntTSL 418.16■□□□□ 0.51e-28■■■■■ 50.8
NCBP2P52298 SCLY-204ENST00000413463 542 ntTSL 518.16■□□□□ 0.51e-28■■■■■ 50.8
NCBP2P52298 SCLY-203ENST00000412508 585 ntTSL 214.92□□□□□ -0.021e-28■■■■■ 50.8
NCBP2P52298 SCLY-215ENST00000480357 5668 ntTSL 1 (best)14.5□□□□□ -0.091e-28■■■■■ 50.8
NCBP2P52298 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.25□□□□□ -0.131e-28■■■■■ 50.8
NCBP2P52298 SCLY-205ENST00000416757 807 ntTSL 213.88□□□□□ -0.191e-28■■■■■ 50.8
NCBP2P52298 SCLY-206ENST00000423324 628 ntTSL 413.5□□□□□ -0.251e-28■■■■■ 50.8
NCBP2P52298 SCLY-218ENST00000487197 770 ntTSL 27.13□□□□□ -1.271e-28■■■■■ 50.8
NCBP2P52298 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.464e-45■■■■■ 49.9
NCBP2P52298 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.224e-45■■■■■ 49.9
NCBP2P52298 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.214e-45■■■■■ 49.9
NCBP2P52298 TRA2A-208ENST00000490942 862 ntTSL 1 (best)14.73□□□□□ -0.054e-45■■■■■ 49.9
NCBP2P52298 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.094e-45■■■■■ 49.9
NCBP2P52298 TRA2A-203ENST00000448549 582 ntTSL 414□□□□□ -0.174e-45■■■■■ 49.9
NCBP2P52298 TRA2A-209ENST00000494255 1653 ntTSL 1 (best)11.59□□□□□ -0.554e-45■■■■■ 49.9
NCBP2P52298 C12orf57-203ENST00000538392 979 ntTSL 217.24■□□□□ 0.359e-8■■■■■ 49
NCBP2P52298 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.11□□□□□ -0.319e-8■■■■■ 49
NCBP2P52298 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC10.12□□□□□ -0.799e-8■■■■■ 49
NCBP2P52298 C12orf57-207ENST00000545581 556 ntTSL 38.53□□□□□ -1.049e-8■■■■■ 49
NCBP2P52298 C12orf57-205ENST00000542222 640 ntTSL 28.4□□□□□ -1.069e-8■■■■■ 49
Retrieved 100 of 18,329 protein–RNA pairs in 67.2 ms