RNA–Protein interactions for RNA: ENST00000483359.5

CPNE1-224, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,975 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-224ENST00000483359 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.24■□□□□ 0.671e-6■■■■■ 117.8
CPNE1-224ENST00000483359 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.29■■□□□ 19e-8■■■■■ 116.8
CPNE1-224ENST00000483359 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.49■□□□□ 0.393e-13■■■■■ 108.9
CPNE1-224ENST00000483359 SF3B1O75533 1304 aaKnown RBP eCLIP19.22■□□□□ 0.672e-6■■■■■ 85.9
CPNE1-224ENST00000483359 CSTF2P33240 577 aaKnown RBP eCLIP17.18■□□□□ 0.342e-45■■■■■ 66.1
CPNE1-224ENST00000483359 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.66■□□□□ 0.744e-13■■■■■ 56.2
CPNE1-224ENST00000483359 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.89■□□□□ 0.612e-6■■■■■ 55.4
CPNE1-224ENST00000483359 PCBP1Q15365 356 aaKnown RBP eCLIP19.59■□□□□ 0.731e-8■■■■■ 43
CPNE1-224ENST00000483359 TIA1P31483 386 aaKnown RBP eCLIP16.81■□□□□ 0.283e-7■■■■■ 41.5
CPNE1-224ENST00000483359 SF3B4Q15427 424 aaKnown RBP eCLIP15.96■□□□□ 0.151e-7■■■■■ 40
CPNE1-224ENST00000483359 ILF3Q12906 894 aaKnown RBP eCLIP17.57■□□□□ 0.47e-7■■■■■ 35.6
CPNE1-224ENST00000483359 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.72■□□□□ 0.278e-8■■■■■ 32.7
CPNE1-224ENST00000483359 TIAL1Q01085 375 aaKnown RBP eCLIP17.44■□□□□ 0.381e-6■■■■■ 29.1
CPNE1-224ENST00000483359 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.6■■□□□ 1.053e-7■■■■■ 27.1
CPNE1-224ENST00000483359 AQRO60306 1485 aaKnown RBP eCLIP30.24■■■□□ 2.433e-7■■■■■ 27
CPNE1-224ENST00000483359 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.64■□□□□ 0.412e-6■■■■■ 26.8
CPNE1-224ENST00000483359 EFTUD2Q15029 972 aaKnown RBP eCLIP17.55■□□□□ 0.46e-8■■■■□ 26.4
CPNE1-224ENST00000483359 RBFOX2O43251 390 aaKnown RBP eCLIP14.13□□□□□ -0.157e-8■■■■□ 26.3
CPNE1-224ENST00000483359 GPKOWQ92917 476 aaPredicted RBP eCLIP20.63■□□□□ 0.891e-7■■■■□ 26.1
CPNE1-224ENST00000483359 HNRNPMP52272 730 aaKnown RBP eCLIP27.47■■□□□ 1.991e-7■■■■□ 25.4
CPNE1-224ENST00000483359 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.56□□□□□ -0.081e-7■■■■□ 24.8
CPNE1-224ENST00000483359 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.82■□□□□ 0.442e-16■■■■□ 24.6
CPNE1-224ENST00000483359 SUB1P53999 127 aaKnown RBP eCLIP13.79□□□□□ -0.21e-12■■■■□ 22.8
CPNE1-224ENST00000483359 U2AF2P26368 475 aaKnown RBP eCLIP20.29■□□□□ 0.849e-27■■■■□ 22.3
CPNE1-224ENST00000483359 YBX3P16989 372 aaKnown RBP eCLIP22.3■■□□□ 1.162e-6■■■■□ 21.8
CPNE1-224ENST00000483359 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.46■□□□□ 0.235e-12■■■■□ 21.5
CPNE1-224ENST00000483359 SMNDC1O75940 238 aaKnown RBP eCLIP15.86■□□□□ 0.131e-15■■■■□ 21.1
CPNE1-224ENST00000483359 DDX6P26196 483 aaKnown RBP eCLIP18.68■□□□□ 0.589e-13■■■■□ 20.8
CPNE1-224ENST00000483359 IGF2BP3O00425 579 aaKnown RBP eCLIP20.96■□□□□ 0.952e-7■■■■□ 20.3
CPNE1-224ENST00000483359 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.78□□□□□ -0.048e-8■■■■□ 20.3
CPNE1-224ENST00000483359 SAFBQ15424 915 aaKnown RBP eCLIP20.37■□□□□ 0.851e-17■■■■□ 20.2
CPNE1-224ENST00000483359 FMR1Q06787 632 aaKnown RBP eCLIP21.47■■□□□ 1.037e-7■■■□□ 18.6
CPNE1-224ENST00000483359 RPS3P23396 243 aaKnown RBP eCLIP17.52■□□□□ 0.43e-8■■■□□ 18.5
CPNE1-224ENST00000483359 FXR2P51116 673 aaKnown RBP eCLIP20.05■□□□□ 0.82e-6■■■□□ 18.4
CPNE1-224ENST00000483359 BCCIPQ9P287 314 aaKnown RBP eCLIP18.13■□□□□ 0.495e-7■■■□□ 17.8
CPNE1-224ENST00000483359 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.04■□□□□ 0.324e-6■■■□□ 17.2
CPNE1-224ENST00000483359 HNRNPCP07910 306 aaKnown RBP eCLIP13.47□□□□□ -0.257e-7■■■□□ 17.1
CPNE1-224ENST00000483359 SF3A3Q12874 501 aaKnown RBP eCLIP16.78■□□□□ 0.283e-8■■■□□ 16.9
CPNE1-224ENST00000483359 PABPC4Q13310 644 aaKnown RBP eCLIP20.87■□□□□ 0.934e-7■■■□□ 15.8
CPNE1-224ENST00000483359 KHSRPQ92945 711 aaKnown RBP eCLIP18.65■□□□□ 0.588e-8■■■□□ 15.7
CPNE1-224ENST00000483359 RBM5P52756 815 aaKnown RBP eCLIP21.69■■□□□ 1.062e-6■■■□□ 15.7
CPNE1-224ENST00000483359 DDX3XO00571 662 aaKnown RBP eCLIP18.74■□□□□ 0.591e-13■■■□□ 15.3
CPNE1-224ENST00000483359 QKIQ96PU8 341 aaKnown RBP eCLIP18.11■□□□□ 0.496e-7■■■□□ 15.2
CPNE1-224ENST00000483359 RBM15Q96T37 977 aaKnown RBP eCLIP18.03■□□□□ 0.482e-7■■■□□ 15.1
CPNE1-224ENST00000483359 GTF2F1P35269 517 aaKnown RBP eCLIP19.09■□□□□ 0.656e-10■■■□□ 14.7
CPNE1-224ENST00000483359 HLTFQ14527 1009 aaKnown RBP eCLIP17.71■□□□□ 0.435e-8■■□□□ 14.2
CPNE1-224ENST00000483359 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.44■□□□□ 0.222e-6■■□□□ 13.7
CPNE1-224ENST00000483359 EIF3HO15372 352 aaKnown RBP eCLIP17.63■□□□□ 0.418e-7■■□□□ 13.6
CPNE1-224ENST00000483359 PPIGQ13427 754 aaKnown RBP eCLIP19.69■□□□□ 0.745e-12■■□□□ 13.5
CPNE1-224ENST00000483359 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.18■■□□□ 1.947e-10■■□□□ 13.2
CPNE1-224ENST00000483359 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.97■■■□□ 2.071e-38■■□□□ 13.2
CPNE1-224ENST00000483359 ZRANB2O95218 330 aaKnown RBP eCLIP18.28■□□□□ 0.521e-6■■□□□ 12.9
CPNE1-224ENST00000483359 RBM22Q9NW64 420 aaKnown RBP eCLIP18.11■□□□□ 0.499e-7■■□□□ 12.8
CPNE1-224ENST00000483359 U2AF1Q01081 240 aaKnown RBP eCLIP23.86■■□□□ 1.416e-11■■□□□ 12.7
CPNE1-224ENST00000483359 PCBP2Q15366 365 aaKnown RBP eCLIP17.11■□□□□ 0.335e-8■■□□□ 12.6
CPNE1-224ENST00000483359 FUSP35637 526 aaKnown RBP eCLIP11.78□□□□□ -0.521e-10■■□□□ 12.2
CPNE1-224ENST00000483359 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.68■■□□□ 1.381e-6■■□□□ 12.2
CPNE1-224ENST00000483359 ZNF622Q969S3 477 aaKnown RBP eCLIP22.44■■□□□ 1.184e-6■■□□□ 12.1
CPNE1-224ENST00000483359 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.6■□□□□ 0.731e-8■■□□□ 11.7
CPNE1-224ENST00000483359 PABPN1Q86U42 306 aaKnown RBP eCLIP34.14■■■■□ 3.061e-6■■□□□ 11.6
CPNE1-224ENST00000483359 PRPF4O43172 522 aaKnown RBP eCLIP17.08■□□□□ 0.332e-8■□□□□ 11.3
CPNE1-224ENST00000483359 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.88■□□□□ 0.618e-7■□□□□ 11.3
CPNE1-224ENST00000483359 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.52■□□□□ 0.562e-10■□□□□ 11.3
CPNE1-224ENST00000483359 SFPQP23246 707 aaKnown RBP eCLIP19.67■□□□□ 0.748e-7■□□□□ 11.1
CPNE1-224ENST00000483359 G3BP1Q13283 466 aaKnown RBP eCLIP22.11■■□□□ 1.132e-8■□□□□ 11.1
CPNE1-224ENST00000483359 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.55■□□□□ 0.248e-7■□□□□ 11.1
CPNE1-224ENST00000483359 GRSF1Q12849 480 aaKnown RBP eCLIP18.35■□□□□ 0.533e-10■□□□□ 10.9
CPNE1-224ENST00000483359 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.78■■□□□ 1.889e-9■□□□□ 10.7
CPNE1-224ENST00000483359 NIPBLQ6KC79 2804 aaeCLIP14.52□□□□□ -0.081e-8■□□□□ 10.5
CPNE1-224ENST00000483359 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.31■□□□□ 0.846e-9■□□□□ 10.4
CPNE1-224ENST00000483359 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.23■□□□□ 0.992e-6■□□□□ 10.3
CPNE1-224ENST00000483359 HNRNPLP14866 589 aaKnown RBP eCLIP18.21■□□□□ 0.512e-8■□□□□ 10.1
CPNE1-224ENST00000483359 NCBP2P52298 156 aaKnown RBP eCLIP16.65■□□□□ 0.269e-8■□□□□ 9.8
CPNE1-224ENST00000483359 SRSF7Q16629 238 aaKnown RBP eCLIP14.46□□□□□ -0.091e-7■□□□□ 9.8
CPNE1-224ENST00000483359 TAF15Q92804 592 aaKnown RBP eCLIP14.32□□□□□ -0.121e-6■□□□□ 9.7
CPNE1-224ENST00000483359 FTOQ9C0B1 505 aaKnown RBP eCLIP20.19■□□□□ 0.825e-10■□□□□ 9.7
CPNE1-224ENST00000483359 LARP4Q71RC2 724 aaKnown RBP eCLIP16.75■□□□□ 0.278e-24■□□□□ 9.5
CPNE1-224ENST00000483359 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.52■□□□□ 0.873e-8■□□□□ 9.3
CPNE1-224ENST00000483359 SRSF1Q07955 248 aaKnown RBP eCLIP15.89■□□□□ 0.133e-6■□□□□ 9.1
CPNE1-224ENST00000483359 SAFB2Q14151 953 aaKnown RBP eCLIP25.35■■□□□ 1.653e-13■□□□□ 9.1
CPNE1-224ENST00000483359 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.41■□□□□ 0.542e-10■□□□□ 8.4
CPNE1-224ENST00000483359 NOLC1Q14978 699 aaKnown RBP eCLIP19.52■□□□□ 0.713e-8■□□□□ 8.2
Retrieved 82 of 82 RNA–protein pairs in 21.4 ms