Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM4Q9Y4Z0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM4Q9Y4Z0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LSM4Q9Y4Z0 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.26■□□□□ 0.99
LSM4Q9Y4Z0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.26■□□□□ 0.99
LSM4Q9Y4Z0 SUZ12P1-203ENST00000578195 985 ntBASIC21.25■□□□□ 0.99
LSM4Q9Y4Z0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.25■□□□□ 0.99
LSM4Q9Y4Z0 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LSM4Q9Y4Z0 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM4Q9Y4Z0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.23■□□□□ 0.99
LSM4Q9Y4Z0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM4Q9Y4Z0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.23■□□□□ 0.99
LSM4Q9Y4Z0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM4Q9Y4Z0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM4Q9Y4Z0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM4Q9Y4Z0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM4Q9Y4Z0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.21■□□□□ 0.99
LSM4Q9Y4Z0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM4Q9Y4Z0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM4Q9Y4Z0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LSM4Q9Y4Z0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM4Q9Y4Z0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LSM4Q9Y4Z0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.19■□□□□ 0.98
LSM4Q9Y4Z0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LSM4Q9Y4Z0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LSM4Q9Y4Z0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LSM4Q9Y4Z0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM4Q9Y4Z0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM4Q9Y4Z0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LSM4Q9Y4Z0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.16■□□□□ 0.98
LSM4Q9Y4Z0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LSM4Q9Y4Z0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.15■□□□□ 0.98
LSM4Q9Y4Z0 AL161658.1-201ENST00000623641 1967 ntBASIC21.15■□□□□ 0.98
LSM4Q9Y4Z0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LSM4Q9Y4Z0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
LSM4Q9Y4Z0 RPS2P35-201ENST00000443417 897 ntBASIC21.14■□□□□ 0.97
LSM4Q9Y4Z0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
LSM4Q9Y4Z0 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM4Q9Y4Z0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM4Q9Y4Z0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM4Q9Y4Z0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.13■□□□□ 0.97
LSM4Q9Y4Z0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LSM4Q9Y4Z0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.11■□□□□ 0.97
LSM4Q9Y4Z0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LSM4Q9Y4Z0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
LSM4Q9Y4Z0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LSM4Q9Y4Z0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LSM4Q9Y4Z0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LSM4Q9Y4Z0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.1■□□□□ 0.97
LSM4Q9Y4Z0 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LSM4Q9Y4Z0 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LSM4Q9Y4Z0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LSM4Q9Y4Z0 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LSM4Q9Y4Z0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
LSM4Q9Y4Z0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.08■□□□□ 0.97
LSM4Q9Y4Z0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LSM4Q9Y4Z0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LSM4Q9Y4Z0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
LSM4Q9Y4Z0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LSM4Q9Y4Z0 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM4Q9Y4Z0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM4Q9Y4Z0 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM4Q9Y4Z0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LSM4Q9Y4Z0 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM4Q9Y4Z0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
LSM4Q9Y4Z0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM4Q9Y4Z0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM4Q9Y4Z0 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LSM4Q9Y4Z0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LSM4Q9Y4Z0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
LSM4Q9Y4Z0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.02■□□□□ 0.96
LSM4Q9Y4Z0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LSM4Q9Y4Z0 AL135925.1-201ENST00000605920 1701 ntBASIC21.01■□□□□ 0.95
LSM4Q9Y4Z0 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM4Q9Y4Z0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM4Q9Y4Z0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LSM4Q9Y4Z0 CAHM-201ENST00000604200 896 ntBASIC21.01■□□□□ 0.95
LSM4Q9Y4Z0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LSM4Q9Y4Z0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
LSM4Q9Y4Z0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21■□□□□ 0.95
LSM4Q9Y4Z0 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LSM4Q9Y4Z0 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM4Q9Y4Z0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM4Q9Y4Z0 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LSM4Q9Y4Z0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LSM4Q9Y4Z0 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
LSM4Q9Y4Z0 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LSM4Q9Y4Z0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
LSM4Q9Y4Z0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.97■□□□□ 0.95
LSM4Q9Y4Z0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM4Q9Y4Z0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LSM4Q9Y4Z0 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
LSM4Q9Y4Z0 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LSM4Q9Y4Z0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LSM4Q9Y4Z0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.95■□□□□ 0.94
LSM4Q9Y4Z0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM4Q9Y4Z0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LSM4Q9Y4Z0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LSM4Q9Y4Z0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM4Q9Y4Z0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms