RNA–Protein interactions for RNA: ENST00000398969.7

COL13A1-203, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 2,267 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-203ENST00000398969 NISCHQ9Y2I1 1504 aa53.84■■■■■ 6.21
COL13A1-203ENST00000398969 CCDC180Q9P1Z9 1646 aa46.58■■■■■ 5.05
COL13A1-203ENST00000398969 ZCCHC6Q5VYS8 1495 aaKnown RBP45.32■■■■■ 4.85
COL13A1-203ENST00000398969 SHROOM4Q9ULL8 1493 aa44.98■■■■■ 4.79
COL13A1-203ENST00000398969 DCAF8L2P0C7V8 631 aa44.49■■■■■ 4.71
COL13A1-203ENST00000398969 DCAF1Q9Y4B6 1507 aa44.43■■■■■ 4.7
COL13A1-203ENST00000398969 SUPT5HO00267 1087 aaKnown RBP44.17■■■■■ 4.66
COL13A1-203ENST00000398969 ABCC9O60706 1549 aa43.77■■■■■ 4.6
COL13A1-203ENST00000398969 MYO15BQ96JP2 1530 aa43.68■■■■■ 4.58
COL13A1-203ENST00000398969 NACADO15069 1562 aa43.3■■■■■ 4.52
COL13A1-203ENST00000398969 CHIC1Q5VXU3 224 aa43.11■■■■■ 4.49
COL13A1-203ENST00000398969 SCRIBQ14160 1630 aa43.06■■■■■ 4.48
COL13A1-203ENST00000398969 RB1CC1Q8TDY2 1594 aa42.81■■■■■ 4.44
COL13A1-203ENST00000398969 HRCP23327 699 aa42.05■■■■■ 4.32
COL13A1-203ENST00000398969 UNC13AQ9UPW8 1703 aa42.03■■■■■ 4.32
COL13A1-203ENST00000398969 RSF1Q96T23 1441 aaPredicted RBP42.03■■■■■ 4.32
COL13A1-203ENST00000398969 CECR2Q9BXF3 1484 aa41.89■■■■■ 4.3
COL13A1-203ENST00000398969 PCGF6Q9BYE7 350 aa41.85■■■■■ 4.29
COL13A1-203ENST00000398969 LOC105371045A0A1W2PR82 267 aa41.76■■■■■ 4.28
COL13A1-203ENST00000398969 MROH2BQ7Z745 1585 aa41.67■■■■■ 4.26
COL13A1-203ENST00000398969 BICRAQ9NZM4 1560 aa41.59■■■■■ 4.25
COL13A1-203ENST00000398969 BAZ1AQ9NRL2 1556 aaPredicted RBP41.5■■■■■ 4.23
COL13A1-203ENST00000398969 PABPN1Q86U42 306 aaKnown RBP eCLIP41.46■■■■■ 4.23
COL13A1-203ENST00000398969 WIZO95785 1651 aa41.36■■■■■ 4.21
COL13A1-203ENST00000398969 SMARCA4P51532 1647 aa41.26■■■■■ 4.2
COL13A1-203ENST00000398969 TRIM41Q8WV44 630 aa41.19■■■■■ 4.18
COL13A1-203ENST00000398969 TRIM26Q12899 539 aaPredicted RBP41.11■■■■■ 4.17
COL13A1-203ENST00000398969 PPARGC1BQ86YN6 1023 aaKnown RBP41.05■■■■■ 4.16
COL13A1-203ENST00000398969 TOP2AP11388 1531 aaKnown RBP40.86■■■■■ 4.13
COL13A1-203ENST00000398969 FAM9AQ8IZU1 332 aaPredicted RBP40.78■■■■■ 4.12
COL13A1-203ENST00000398969 PEG3Q9GZU2 1588 aa40.7■■■■■ 4.11
COL13A1-203ENST00000398969 CCDC88BA6NC98 1476 aa40.54■■■■■ 4.08
COL13A1-203ENST00000398969 SMARCA2P51531 1590 aa40.54■■■■■ 4.08
COL13A1-203ENST00000398969 ATAD2BQ9ULI0 1458 aa40.49■■■■■ 4.07
COL13A1-203ENST00000398969 EIF4G1Q04637 1599 aaKnown RBP40.48■■■■■ 4.07
COL13A1-203ENST00000398969 EHMT2Q96KQ7 1210 aa40.35■■■■■ 4.05
COL13A1-203ENST00000398969 ZEB1P37275 1124 aaPredicted RBP40.31■■■■■ 4.04
COL13A1-203ENST00000398969 BAZ1BQ9UIG0 1483 aaKnown RBP40.28■■■■■ 4.04
COL13A1-203ENST00000398969 NCAPD3P42695 1498 aa40.02■■■■■ 4
COL13A1-203ENST00000398969 ABCC8Q09428 1581 aa39.97■■■■□ 3.99
COL13A1-203ENST00000398969 HMGXB3Q12766 1538 aa39.96■■■■□ 3.99
COL13A1-203ENST00000398969 SOGA1O94964 1423 aa39.61■■■■□ 3.93
COL13A1-203ENST00000398969 WRNQ14191 1432 aaPredicted RBP eCLIP39.6■■■■□ 3.93
COL13A1-203ENST00000398969 CC2D2AQ9P2K1 1620 aa39.57■■■■□ 3.92
COL13A1-203ENST00000398969 EEA1Q15075 1411 aa39.54■■■■□ 3.92
COL13A1-203ENST00000398969 CEP162Q5TB80 1403 aa39.53■■■■□ 3.92
COL13A1-203ENST00000398969 TNIKQ9UKE5 1360 aa39.49■■■■□ 3.91
COL13A1-203ENST00000398969 RUSC2Q8N2Y8 1516 aa39.41■■■■□ 3.9
COL13A1-203ENST00000398969 CSRNP3Q8WYN3 585 aa39.4■■■■□ 3.9
COL13A1-203ENST00000398969 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.37■■■■□ 3.89
COL13A1-203ENST00000398969 SYNJ1O43426 1573 aa39.34■■■■□ 3.89
COL13A1-203ENST00000398969 CFTRP13569 1480 aa39.29■■■■□ 3.88
COL13A1-203ENST00000398969 CCER1Q8TC90 406 aaPredicted RBP39.29■■■■□ 3.88
COL13A1-203ENST00000398969 GOLGA3Q08378 1498 aa39.25■■■■□ 3.87
COL13A1-203ENST00000398969 UBTFP17480 764 aaKnown RBP39.19■■■■□ 3.86
COL13A1-203ENST00000398969 TTBK1Q5TCY1 1321 aaPredicted RBP39.12■■■■□ 3.85
COL13A1-203ENST00000398969 TOP2BQ02880 1626 aa39.1■■■■□ 3.85
COL13A1-203ENST00000398969 CADPSQ9ULU8 1353 aa39.06■■■■□ 3.84
COL13A1-203ENST00000398969 PRDM2Q13029 1718 aa39.03■■■■□ 3.84
COL13A1-203ENST00000398969 KIF21BO75037 1637 aa39.02■■■■□ 3.84
COL13A1-203ENST00000398969 BIVM-ERCC5R4GMW8 1640 aa39.02■■■■□ 3.84
COL13A1-203ENST00000398969 CEP164Q9UPV0 1460 aa39.01■■■■□ 3.84
COL13A1-203ENST00000398969 CUX1P39880 1505 aa38.9■■■■□ 3.82
COL13A1-203ENST00000398969 SCAF1Q9H7N4 1312 aaKnown RBP38.78■■■■□ 3.8
COL13A1-203ENST00000398969 CLIP1P30622 1438 aa38.77■■■■□ 3.8
COL13A1-203ENST00000398969 RAPGEF2Q9Y4G8 1499 aa38.67■■■■□ 3.78
COL13A1-203ENST00000398969 VPS8Q8N3P4 1428 aa38.65■■■■□ 3.78
COL13A1-203ENST00000398969 FANCD2Q9BXW9 1451 aa38.63■■■■□ 3.78
COL13A1-203ENST00000398969 DIEXFQ68CQ4 756 aaKnown RBP38.61■■■■□ 3.77
COL13A1-203ENST00000398969 NESP48681 1621 aa38.61■■■■□ 3.77
COL13A1-203ENST00000398969 DNAJC5BQ9UF47 199 aa38.59■■■■□ 3.77
COL13A1-203ENST00000398969 LAMC3Q9Y6N6 1575 aa38.53■■■■□ 3.76
COL13A1-203ENST00000398969 KIF27Q86VH2 1401 aa38.46■■■■□ 3.75
COL13A1-203ENST00000398969 ACIN1Q9UKV3 1341 aaKnown RBP38.41■■■■□ 3.74
COL13A1-203ENST00000398969 FGD5Q6ZNL6 1462 aa38.4■■■■□ 3.74
COL13A1-203ENST00000398969 HNRNPUL2Q1KMD3 747 aaKnown RBP38.39■■■■□ 3.74
COL13A1-203ENST00000398969 APLP2Q06481 763 aa38.37■■■■□ 3.73
COL13A1-203ENST00000398969 ERICH3Q5RHP9 1530 aa38.37■■■■□ 3.73
COL13A1-203ENST00000398969 PRXQ9BXM0 1461 aa38.34■■■■□ 3.73
COL13A1-203ENST00000398969 DNMBPQ6XZF7 1577 aa38.33■■■■□ 3.73
COL13A1-203ENST00000398969 ZNF316A6NFI3 1004 aaPredicted RBP38.33■■■■□ 3.73
COL13A1-203ENST00000398969 NEUROD1Q13562 356 aa38.31■■■■□ 3.72
COL13A1-203ENST00000398969 RANGAP1P46060 587 aaPredicted RBP38.27■■■■□ 3.72
COL13A1-203ENST00000398969 TOPBP1Q92547 1522 aa38.27■■■■□ 3.72
COL13A1-203ENST00000398969 CUX2O14529 1486 aa38.27■■■■□ 3.72
COL13A1-203ENST00000398969 PDS5BQ9NTI5 1447 aa38.26■■■■□ 3.71
COL13A1-203ENST00000398969 PELP1Q8IZL8 1130 aaKnown RBP38.18■■■■□ 3.7
COL13A1-203ENST00000398969 CENPBP07199 599 aaPredicted RBP38.17■■■■□ 3.7
COL13A1-203ENST00000398969 ARAP1Q96P48 1450 aa38.16■■■■□ 3.7
COL13A1-203ENST00000398969 POLA1P09884 1462 aaPredicted RBP38.14■■■■□ 3.7
COL13A1-203ENST00000398969 URB2Q14146 1524 aaKnown RBP38.13■■■■□ 3.69
COL13A1-203ENST00000398969 IGF1RP08069 1367 aa38.11■■■■□ 3.69
COL13A1-203ENST00000398969 KIF21AQ7Z4S6 1674 aa38.07■■■■□ 3.69
COL13A1-203ENST00000398969 RAD54L2Q9Y4B4 1467 aa38.07■■■■□ 3.69
COL13A1-203ENST00000398969 ABCA10Q8WWZ4 1543 aa38.04■■■■□ 3.68
COL13A1-203ENST00000398969 GTF3C3Q9Y5Q9 886 aa37.92■■■■□ 3.66
COL13A1-203ENST00000398969 CARMIL1Q5VZK9 1371 aa37.92■■■■□ 3.66
COL13A1-203ENST00000398969 KANK4Q5T7N3 995 aaPredicted RBP37.89■■■■□ 3.66
COL13A1-203ENST00000398969 WDR97A6NE52 1622 aa37.83■■■■□ 3.65
COL13A1-203ENST00000398969 CLSPNQ9HAW4 1339 aa37.82■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms