RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 NISCHQ9Y2I1 1504 aa52.92■■■■■ 6.06
RAB40C-201ENST00000248139 SHROOM4Q9ULL8 1493 aa45.64■■■■■ 4.9
RAB40C-201ENST00000248139 CCDC180Q9P1Z9 1646 aa44.73■■■■■ 4.75
RAB40C-201ENST00000248139 SUPT5HO00267 1087 aaKnown RBP44.73■■■■■ 4.75
RAB40C-201ENST00000248139 ZCCHC6Q5VYS8 1495 aaKnown RBP44.71■■■■■ 4.75
RAB40C-201ENST00000248139 DCAF8L2P0C7V8 631 aa44.48■■■■■ 4.71
RAB40C-201ENST00000248139 CHIC1Q5VXU3 224 aa43.27■■■■■ 4.52
RAB40C-201ENST00000248139 MYO15BQ96JP2 1530 aa43.15■■■■■ 4.5
RAB40C-201ENST00000248139 DCAF1Q9Y4B6 1507 aa43.15■■■■■ 4.5
RAB40C-201ENST00000248139 SCRIBQ14160 1630 aa42.35■■■■■ 4.37
RAB40C-201ENST00000248139 LOC105371045A0A1W2PR82 267 aa42.23■■■■■ 4.35
RAB40C-201ENST00000248139 ABCC9O60706 1549 aa42.15■■■■■ 4.34
RAB40C-201ENST00000248139 PCGF6Q9BYE7 350 aa42.08■■■■■ 4.33
RAB40C-201ENST00000248139 RSF1Q96T23 1441 aaPredicted RBP41.98■■■■■ 4.31
RAB40C-201ENST00000248139 HRCP23327 699 aa41.85■■■■■ 4.29
RAB40C-201ENST00000248139 RB1CC1Q8TDY2 1594 aa41.58■■■■■ 4.25
RAB40C-201ENST00000248139 CECR2Q9BXF3 1484 aa41.51■■■■■ 4.24
RAB40C-201ENST00000248139 TRIM41Q8WV44 630 aa41.48■■■■■ 4.23
RAB40C-201ENST00000248139 NACADO15069 1562 aa41.46■■■■■ 4.23
RAB40C-201ENST00000248139 FAM9AQ8IZU1 332 aaPredicted RBP41.42■■■■■ 4.22
RAB40C-201ENST00000248139 PPARGC1BQ86YN6 1023 aaKnown RBP41.34■■■■■ 4.21
RAB40C-201ENST00000248139 EHMT2Q96KQ7 1210 aa41.29■■■■■ 4.2
RAB40C-201ENST00000248139 MROH2BQ7Z745 1585 aa41.28■■■■■ 4.2
RAB40C-201ENST00000248139 WIZO95785 1651 aa41.07■■■■■ 4.17
RAB40C-201ENST00000248139 TRIM26Q12899 539 aaPredicted RBP41.03■■■■■ 4.16
RAB40C-201ENST00000248139 BAZ1AQ9NRL2 1556 aaPredicted RBP40.59■■■■■ 4.09
RAB40C-201ENST00000248139 PABPN1Q86U42 306 aaKnown RBP eCLIP40.34■■■■■ 4.05
RAB40C-201ENST00000248139 UNC13AQ9UPW8 1703 aa40.34■■■■■ 4.05
RAB40C-201ENST00000248139 EIF4G1Q04637 1599 aaKnown RBP40.29■■■■■ 4.04
RAB40C-201ENST00000248139 SMARCA4P51532 1647 aa40.29■■■■■ 4.04
RAB40C-201ENST00000248139 ABCC8Q09428 1581 aa40.24■■■■■ 4.03
RAB40C-201ENST00000248139 CCDC88BA6NC98 1476 aa40.24■■■■■ 4.03
RAB40C-201ENST00000248139 TOP2AP11388 1531 aaKnown RBP40.22■■■■■ 4.03
RAB40C-201ENST00000248139 SMARCA2P51531 1590 aa40.09■■■■■ 4.01
RAB40C-201ENST00000248139 ZEB1P37275 1124 aaPredicted RBP39.93■■■■□ 3.98
RAB40C-201ENST00000248139 TTBK1Q5TCY1 1321 aaPredicted RBP39.89■■■■□ 3.98
RAB40C-201ENST00000248139 SOGA1O94964 1423 aa39.88■■■■□ 3.98
RAB40C-201ENST00000248139 BICRAQ9NZM4 1560 aa39.86■■■■□ 3.97
RAB40C-201ENST00000248139 RUSC2Q8N2Y8 1516 aa39.73■■■■□ 3.95
RAB40C-201ENST00000248139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.68■■■■□ 3.94
RAB40C-201ENST00000248139 UBTFP17480 764 aaKnown RBP39.58■■■■□ 3.93
RAB40C-201ENST00000248139 CSRNP3Q8WYN3 585 aa39.58■■■■□ 3.93
RAB40C-201ENST00000248139 CEP162Q5TB80 1403 aa39.58■■■■□ 3.93
RAB40C-201ENST00000248139 CCER1Q8TC90 406 aaPredicted RBP39.45■■■■□ 3.91
RAB40C-201ENST00000248139 WRNQ14191 1432 aaPredicted RBP eCLIP39.42■■■■□ 3.9
RAB40C-201ENST00000248139 TNIKQ9UKE5 1360 aa39.41■■■■□ 3.9
RAB40C-201ENST00000248139 PEG3Q9GZU2 1588 aa39.34■■■■□ 3.89
RAB40C-201ENST00000248139 ATAD2BQ9ULI0 1458 aa39.33■■■■□ 3.89
RAB40C-201ENST00000248139 EEA1Q15075 1411 aa39.28■■■■□ 3.88
RAB40C-201ENST00000248139 SYNJ1O43426 1573 aa39.25■■■■□ 3.87
RAB40C-201ENST00000248139 BAZ1BQ9UIG0 1483 aaKnown RBP39.23■■■■□ 3.87
RAB40C-201ENST00000248139 GOLGA3Q08378 1498 aa39.18■■■■□ 3.86
RAB40C-201ENST00000248139 RANGAP1P46060 587 aaPredicted RBP39.11■■■■□ 3.85
RAB40C-201ENST00000248139 CEP164Q9UPV0 1460 aa38.93■■■■□ 3.82
RAB40C-201ENST00000248139 RAPGEF2Q9Y4G8 1499 aa38.85■■■■□ 3.81
RAB40C-201ENST00000248139 CLIP1P30622 1438 aa38.84■■■■□ 3.81
RAB40C-201ENST00000248139 HNRNPUL2Q1KMD3 747 aaKnown RBP38.79■■■■□ 3.8
RAB40C-201ENST00000248139 KIF21BO75037 1637 aa38.79■■■■□ 3.8
RAB40C-201ENST00000248139 SCAF1Q9H7N4 1312 aaKnown RBP38.67■■■■□ 3.78
RAB40C-201ENST00000248139 TOP2BQ02880 1626 aa38.62■■■■□ 3.77
RAB40C-201ENST00000248139 DIEXFQ68CQ4 756 aaKnown RBP38.61■■■■□ 3.77
RAB40C-201ENST00000248139 VPS8Q8N3P4 1428 aa38.59■■■■□ 3.77
RAB40C-201ENST00000248139 APLP2Q06481 763 aa38.57■■■■□ 3.76
RAB40C-201ENST00000248139 NCAPD3P42695 1498 aa38.46■■■■□ 3.75
RAB40C-201ENST00000248139 BIVM-ERCC5R4GMW8 1640 aa38.42■■■■□ 3.74
RAB40C-201ENST00000248139 CUX1P39880 1505 aa38.39■■■■□ 3.74
RAB40C-201ENST00000248139 HMGXB3Q12766 1538 aa38.35■■■■□ 3.73
RAB40C-201ENST00000248139 NEUROD1Q13562 356 aa38.31■■■■□ 3.72
RAB40C-201ENST00000248139 PRXQ9BXM0 1461 aa38.3■■■■□ 3.72
RAB40C-201ENST00000248139 ZNF316A6NFI3 1004 aaPredicted RBP38.26■■■■□ 3.72
RAB40C-201ENST00000248139 KANK4Q5T7N3 995 aaPredicted RBP38.22■■■■□ 3.71
RAB40C-201ENST00000248139 ACIN1Q9UKV3 1341 aaKnown RBP38.21■■■■□ 3.71
RAB40C-201ENST00000248139 CFTRP13569 1480 aa38.2■■■■□ 3.71
RAB40C-201ENST00000248139 ARAP1Q96P48 1450 aa38.19■■■■□ 3.7
RAB40C-201ENST00000248139 KIF27Q86VH2 1401 aa38.16■■■■□ 3.7
RAB40C-201ENST00000248139 ERICH3Q5RHP9 1530 aa38.15■■■■□ 3.7
RAB40C-201ENST00000248139 YTHDC1Q96MU7 727 aaKnown RBP37.94■■■■□ 3.66
RAB40C-201ENST00000248139 CUX2O14529 1486 aa37.91■■■■□ 3.66
RAB40C-201ENST00000248139 CENPBP07199 599 aaPredicted RBP37.9■■■■□ 3.66
RAB40C-201ENST00000248139 GTF3C3Q9Y5Q9 886 aa37.89■■■■□ 3.66
RAB40C-201ENST00000248139 ARHGAP35Q9NRY4 1499 aa37.88■■■■□ 3.65
RAB40C-201ENST00000248139 MIER1Q8N108 512 aa37.87■■■■□ 3.65
RAB40C-201ENST00000248139 ITGAEP38570 1179 aa37.86■■■■□ 3.65
RAB40C-201ENST00000248139 IGF1RP08069 1367 aa37.84■■■■□ 3.65
RAB40C-201ENST00000248139 CADPSQ9ULU8 1353 aa37.84■■■■□ 3.65
RAB40C-201ENST00000248139 DHX57Q6P158 1386 aaKnown RBP37.77■■■■□ 3.64
RAB40C-201ENST00000248139 FGD5Q6ZNL6 1462 aa37.73■■■■□ 3.63
RAB40C-201ENST00000248139 CARMIL1Q5VZK9 1371 aa37.68■■■■□ 3.62
RAB40C-201ENST00000248139 P3H3Q8IVL6 736 aa37.68■■■■□ 3.62
RAB40C-201ENST00000248139 PRDM2Q13029 1718 aa37.66■■■■□ 3.62
RAB40C-201ENST00000248139 RRBP1Q9P2E9 1410 aaKnown RBP37.64■■■■□ 3.62
RAB40C-201ENST00000248139 CC2D2AQ9P2K1 1620 aa37.63■■■■□ 3.61
RAB40C-201ENST00000248139 CCNB3Q8WWL7 1395 aa37.6■■■■□ 3.61
RAB40C-201ENST00000248139 ATP1B4Q9UN42 357 aaPredicted RBP37.56■■■■□ 3.6
RAB40C-201ENST00000248139 FANCD2Q9BXW9 1451 aa37.51■■■■□ 3.6
RAB40C-201ENST00000248139 RAD54L2Q9Y4B4 1467 aa37.48■■■■□ 3.59
RAB40C-201ENST00000248139 CLSPNQ9HAW4 1339 aa37.45■■■■□ 3.59
RAB40C-201ENST00000248139 NESP48681 1621 aa37.44■■■■□ 3.58
RAB40C-201ENST00000248139 TIAM1Q13009 1591 aa37.37■■■■□ 3.57
RAB40C-201ENST00000248139 FAM50AQ14320 339 aaKnown RBP37.34■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms