RNA–Protein interactions for RNA: ENST00000522165.5

COL13A1-214, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 2,061 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-214ENST00000522165 NISCHQ9Y2I1 1504 aa57.03■■■■■ 6.72
COL13A1-214ENST00000522165 CCDC180Q9P1Z9 1646 aa49.32■■■■■ 5.49
COL13A1-214ENST00000522165 ZCCHC6Q5VYS8 1495 aaKnown RBP48.04■■■■■ 5.28
COL13A1-214ENST00000522165 SHROOM4Q9ULL8 1493 aa47.14■■■■■ 5.14
COL13A1-214ENST00000522165 DCAF1Q9Y4B6 1507 aa47.09■■■■■ 5.13
COL13A1-214ENST00000522165 DCAF8L2P0C7V8 631 aa46.99■■■■■ 5.11
COL13A1-214ENST00000522165 MYO15BQ96JP2 1530 aa46.25■■■■■ 4.99
COL13A1-214ENST00000522165 ABCC9O60706 1549 aa46.17■■■■■ 4.98
COL13A1-214ENST00000522165 NACADO15069 1562 aa45.8■■■■■ 4.92
COL13A1-214ENST00000522165 SUPT5HO00267 1087 aaKnown RBP45.69■■■■■ 4.9
COL13A1-214ENST00000522165 SCRIBQ14160 1630 aa45.58■■■■■ 4.89
COL13A1-214ENST00000522165 RB1CC1Q8TDY2 1594 aa45.25■■■■■ 4.83
COL13A1-214ENST00000522165 RSF1Q96T23 1441 aaPredicted RBP44.55■■■■■ 4.72
COL13A1-214ENST00000522165 UNC13AQ9UPW8 1703 aa44.43■■■■■ 4.7
COL13A1-214ENST00000522165 CECR2Q9BXF3 1484 aa44.33■■■■■ 4.69
COL13A1-214ENST00000522165 MROH2BQ7Z745 1585 aa44.14■■■■■ 4.66
COL13A1-214ENST00000522165 CHIC1Q5VXU3 224 aa44.08■■■■■ 4.65
COL13A1-214ENST00000522165 BAZ1AQ9NRL2 1556 aaPredicted RBP43.95■■■■■ 4.63
COL13A1-214ENST00000522165 BICRAQ9NZM4 1560 aa43.95■■■■■ 4.63
COL13A1-214ENST00000522165 WIZO95785 1651 aa43.81■■■■■ 4.6
COL13A1-214ENST00000522165 PABPN1Q86U42 306 aaKnown RBP eCLIP43.74■■■■■ 4.59
COL13A1-214ENST00000522165 SMARCA4P51532 1647 aa43.69■■■■■ 4.58
COL13A1-214ENST00000522165 TOP2AP11388 1531 aaKnown RBP43.31■■■■■ 4.52
COL13A1-214ENST00000522165 PEG3Q9GZU2 1588 aa43.09■■■■■ 4.49
COL13A1-214ENST00000522165 SMARCA2P51531 1590 aa42.96■■■■■ 4.47
COL13A1-214ENST00000522165 CCDC88BA6NC98 1476 aa42.94■■■■■ 4.46
COL13A1-214ENST00000522165 EIF4G1Q04637 1599 aaKnown RBP42.89■■■■■ 4.46
COL13A1-214ENST00000522165 TRIM41Q8WV44 630 aa42.86■■■■■ 4.45
COL13A1-214ENST00000522165 ATAD2BQ9ULI0 1458 aa42.82■■■■■ 4.45
COL13A1-214ENST00000522165 BAZ1BQ9UIG0 1483 aaKnown RBP42.61■■■■■ 4.41
COL13A1-214ENST00000522165 LOC105371045A0A1W2PR82 267 aa42.48■■■■■ 4.39
COL13A1-214ENST00000522165 NCAPD3P42695 1498 aa42.31■■■■■ 4.36
COL13A1-214ENST00000522165 ABCC8Q09428 1581 aa42.29■■■■■ 4.36
COL13A1-214ENST00000522165 HMGXB3Q12766 1538 aa42.27■■■■■ 4.36
COL13A1-214ENST00000522165 FAM9AQ8IZU1 332 aaPredicted RBP42.16■■■■■ 4.34
COL13A1-214ENST00000522165 WRNQ14191 1432 aaPredicted RBP eCLIP41.89■■■■■ 4.3
COL13A1-214ENST00000522165 CC2D2AQ9P2K1 1620 aa41.76■■■■■ 4.28
COL13A1-214ENST00000522165 SYNJ1O43426 1573 aa41.71■■■■■ 4.27
COL13A1-214ENST00000522165 SOGA1O94964 1423 aa41.65■■■■■ 4.26
COL13A1-214ENST00000522165 EHMT2Q96KQ7 1210 aa41.6■■■■■ 4.25
COL13A1-214ENST00000522165 EEA1Q15075 1411 aa41.6■■■■■ 4.25
COL13A1-214ENST00000522165 CFTRP13569 1480 aa41.57■■■■■ 4.25
COL13A1-214ENST00000522165 RUSC2Q8N2Y8 1516 aa41.47■■■■■ 4.23
COL13A1-214ENST00000522165 TOP2BQ02880 1626 aa41.45■■■■■ 4.23
COL13A1-214ENST00000522165 CSRNP3Q8WYN3 585 aa41.38■■■■■ 4.22
COL13A1-214ENST00000522165 BIVM-ERCC5R4GMW8 1640 aa41.37■■■■■ 4.21
COL13A1-214ENST00000522165 PRDM2Q13029 1718 aa41.34■■■■■ 4.21
COL13A1-214ENST00000522165 CADPSQ9ULU8 1353 aa41.3■■■■■ 4.2
COL13A1-214ENST00000522165 PCGF6Q9BYE7 350 aa41.24■■■■■ 4.19
COL13A1-214ENST00000522165 CUX1P39880 1505 aa41.21■■■■■ 4.19
COL13A1-214ENST00000522165 TNIKQ9UKE5 1360 aa41.11■■■■■ 4.17
COL13A1-214ENST00000522165 GOLGA3Q08378 1498 aa41.1■■■■■ 4.17
COL13A1-214ENST00000522165 KIF21BO75037 1637 aa41.04■■■■■ 4.16
COL13A1-214ENST00000522165 CEP164Q9UPV0 1460 aa41.03■■■■■ 4.16
COL13A1-214ENST00000522165 TRIM26Q12899 539 aaPredicted RBP41■■■■■ 4.15
COL13A1-214ENST00000522165 CEP162Q5TB80 1403 aa40.97■■■■■ 4.15
COL13A1-214ENST00000522165 UBTFP17480 764 aaKnown RBP40.94■■■■■ 4.14
COL13A1-214ENST00000522165 FANCD2Q9BXW9 1451 aa40.85■■■■■ 4.13
COL13A1-214ENST00000522165 NESP48681 1621 aa40.77■■■■■ 4.12
COL13A1-214ENST00000522165 RAPGEF2Q9Y4G8 1499 aa40.75■■■■■ 4.11
COL13A1-214ENST00000522165 KIF27Q86VH2 1401 aa40.75■■■■■ 4.11
COL13A1-214ENST00000522165 LAMC3Q9Y6N6 1575 aa40.72■■■■■ 4.11
COL13A1-214ENST00000522165 PRXQ9BXM0 1461 aa40.67■■■■■ 4.1
COL13A1-214ENST00000522165 DNAJC5BQ9UF47 199 aa40.65■■■■■ 4.1
COL13A1-214ENST00000522165 FGD5Q6ZNL6 1462 aa40.64■■■■■ 4.1
COL13A1-214ENST00000522165 ERICH3Q5RHP9 1530 aa40.63■■■■■ 4.09
COL13A1-214ENST00000522165 HRCP23327 699 aa40.58■■■■■ 4.09
COL13A1-214ENST00000522165 DNMBPQ6XZF7 1577 aa40.58■■■■■ 4.09
COL13A1-214ENST00000522165 CUX2O14529 1486 aa40.52■■■■■ 4.08
COL13A1-214ENST00000522165 CLIP1P30622 1438 aa40.49■■■■■ 4.07
COL13A1-214ENST00000522165 TOPBP1Q92547 1522 aa40.48■■■■■ 4.07
COL13A1-214ENST00000522165 PPARGC1BQ86YN6 1023 aaKnown RBP40.45■■■■■ 4.07
COL13A1-214ENST00000522165 PDS5BQ9NTI5 1447 aa40.41■■■■■ 4.06
COL13A1-214ENST00000522165 IGF1RP08069 1367 aa40.36■■■■■ 4.05
COL13A1-214ENST00000522165 POLA1P09884 1462 aaPredicted RBP40.35■■■■■ 4.05
COL13A1-214ENST00000522165 URB2Q14146 1524 aaKnown RBP40.32■■■■■ 4.05
COL13A1-214ENST00000522165 ABCA10Q8WWZ4 1543 aa40.28■■■■■ 4.04
COL13A1-214ENST00000522165 RAD54L2Q9Y4B4 1467 aa40.27■■■■■ 4.04
COL13A1-214ENST00000522165 KIF21AQ7Z4S6 1674 aa40.23■■■■■ 4.03
COL13A1-214ENST00000522165 VPS8Q8N3P4 1428 aa40.22■■■■■ 4.03
COL13A1-214ENST00000522165 CARMIL1Q5VZK9 1371 aa40.16■■■■■ 4.02
COL13A1-214ENST00000522165 RANGAP1P46060 587 aaPredicted RBP40.14■■■■■ 4.02
COL13A1-214ENST00000522165 WDR97A6NE52 1622 aa40.06■■■■■ 4
COL13A1-214ENST00000522165 ARAP1Q96P48 1450 aa40.02■■■■■ 4
COL13A1-214ENST00000522165 TTBK1Q5TCY1 1321 aaPredicted RBP39.98■■■■□ 3.99
COL13A1-214ENST00000522165 CUL7Q14999 1698 aa39.91■■■■□ 3.98
COL13A1-214ENST00000522165 ABCA5Q8WWZ7 1642 aa39.89■■■■□ 3.98
COL13A1-214ENST00000522165 ARHGAP35Q9NRY4 1499 aa39.88■■■■□ 3.98
COL13A1-214ENST00000522165 MRC2Q9UBG0 1479 aa39.86■■■■□ 3.97
COL13A1-214ENST00000522165 APLP2Q06481 763 aa39.83■■■■□ 3.97
COL13A1-214ENST00000522165 TDRD9Q8NDG6 1382 aaKnown RBP39.82■■■■□ 3.96
COL13A1-214ENST00000522165 TARBP1Q13395 1621 aaKnown RBP39.81■■■■□ 3.96
COL13A1-214ENST00000522165 GAPVD1Q14C86 1478 aa39.79■■■■□ 3.96
COL13A1-214ENST00000522165 ZEB1P37275 1124 aaPredicted RBP39.67■■■■□ 3.94
COL13A1-214ENST00000522165 WDR62O43379 1518 aa39.62■■■■□ 3.93
COL13A1-214ENST00000522165 CTTNBP2Q8WZ74 1663 aa39.58■■■■□ 3.93
COL13A1-214ENST00000522165 PBRM1Q86U86 1689 aa39.49■■■■□ 3.91
COL13A1-214ENST00000522165 ERCC6Q03468 1493 aa39.47■■■■□ 3.91
COL13A1-214ENST00000522165 IFT140Q96RY7 1462 aa39.47■■■■□ 3.91
COL13A1-214ENST00000522165 EFCAB5A4FU69 1503 aa39.46■■■■□ 3.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms