Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC18.08■□□□□ 0.49
SND1-IT1Q9HBX3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SND1-IT1Q9HBX3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SND1-IT1Q9HBX3 AC120057.4-201ENST00000624722 1615 ntBASIC18.07■□□□□ 0.48
SND1-IT1Q9HBX3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SND1-IT1Q9HBX3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SND1-IT1Q9HBX3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SND1-IT1Q9HBX3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SND1-IT1Q9HBX3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SND1-IT1Q9HBX3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC18.04■□□□□ 0.48
SND1-IT1Q9HBX3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
SND1-IT1Q9HBX3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SND1-IT1Q9HBX3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
SND1-IT1Q9HBX3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SND1-IT1Q9HBX3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SND1-IT1Q9HBX3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SND1-IT1Q9HBX3 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC18.03■□□□□ 0.48
SND1-IT1Q9HBX3 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SND1-IT1Q9HBX3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SND1-IT1Q9HBX3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
SND1-IT1Q9HBX3 AC139426.1-201ENST00000568218 2529 ntBASIC18.02■□□□□ 0.47
SND1-IT1Q9HBX3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SND1-IT1Q9HBX3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SND1-IT1Q9HBX3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SND1-IT1Q9HBX3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SND1-IT1Q9HBX3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SND1-IT1Q9HBX3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC17.96■□□□□ 0.47
SND1-IT1Q9HBX3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SND1-IT1Q9HBX3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC17.96■□□□□ 0.47
SND1-IT1Q9HBX3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SND1-IT1Q9HBX3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC17.96■□□□□ 0.47
SND1-IT1Q9HBX3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SND1-IT1Q9HBX3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SND1-IT1Q9HBX3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SND1-IT1Q9HBX3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC17.94■□□□□ 0.46
SND1-IT1Q9HBX3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SND1-IT1Q9HBX3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SND1-IT1Q9HBX3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SND1-IT1Q9HBX3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SND1-IT1Q9HBX3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SND1-IT1Q9HBX3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC17.91■□□□□ 0.46
SND1-IT1Q9HBX3 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC17.91■□□□□ 0.46
SND1-IT1Q9HBX3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SND1-IT1Q9HBX3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SND1-IT1Q9HBX3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SND1-IT1Q9HBX3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SND1-IT1Q9HBX3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SND1-IT1Q9HBX3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SND1-IT1Q9HBX3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
SND1-IT1Q9HBX3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SND1-IT1Q9HBX3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SND1-IT1Q9HBX3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SND1-IT1Q9HBX3 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC17.85■□□□□ 0.45
SND1-IT1Q9HBX3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SND1-IT1Q9HBX3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
SND1-IT1Q9HBX3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SND1-IT1Q9HBX3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SND1-IT1Q9HBX3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SND1-IT1Q9HBX3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SND1-IT1Q9HBX3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SND1-IT1Q9HBX3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SND1-IT1Q9HBX3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SND1-IT1Q9HBX3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC17.81■□□□□ 0.44
SND1-IT1Q9HBX3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SND1-IT1Q9HBX3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SND1-IT1Q9HBX3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SND1-IT1Q9HBX3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SND1-IT1Q9HBX3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SND1-IT1Q9HBX3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SND1-IT1Q9HBX3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SND1-IT1Q9HBX3 MVK-208ENST00000539696 608 ntTSL 5 BASIC17.77■□□□□ 0.44
SND1-IT1Q9HBX3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SND1-IT1Q9HBX3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SND1-IT1Q9HBX3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SND1-IT1Q9HBX3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC17.77■□□□□ 0.43
SND1-IT1Q9HBX3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SND1-IT1Q9HBX3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SND1-IT1Q9HBX3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC17.75■□□□□ 0.43
SND1-IT1Q9HBX3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SND1-IT1Q9HBX3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SND1-IT1Q9HBX3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC17.75■□□□□ 0.43
SND1-IT1Q9HBX3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SND1-IT1Q9HBX3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SND1-IT1Q9HBX3 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SND1-IT1Q9HBX3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SND1-IT1Q9HBX3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SND1-IT1Q9HBX3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SND1-IT1Q9HBX3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SND1-IT1Q9HBX3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC17.72■□□□□ 0.43
SND1-IT1Q9HBX3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SND1-IT1Q9HBX3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SND1-IT1Q9HBX3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC17.71■□□□□ 0.43
SND1-IT1Q9HBX3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC17.71■□□□□ 0.43
SND1-IT1Q9HBX3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms