RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 DCAF8L2P0C7V8 631 aa39.84■■■■□ 3.97
NPAS3-201ENST00000346562 SUPT5HO00267 1087 aaKnown RBP37.46■■■■□ 3.59
NPAS3-201ENST00000346562 PELP1Q8IZL8 1130 aaKnown RBP36.79■■■■□ 3.48
NPAS3-201ENST00000346562 NISCHQ9Y2I1 1504 aa36.61■■■■□ 3.45
NPAS3-201ENST00000346562 SHROOM4Q9ULL8 1493 aa36.61■■■■□ 3.45
NPAS3-201ENST00000346562 EHMT2Q96KQ7 1210 aa36.55■■■■□ 3.44
NPAS3-201ENST00000346562 APLP2Q06481 763 aa36.47■■■■□ 3.43
NPAS3-201ENST00000346562 FAM9AQ8IZU1 332 aaPredicted RBP36.31■■■■□ 3.4
NPAS3-201ENST00000346562 TTBK1Q5TCY1 1321 aaPredicted RBP35.37■■■■□ 3.25
NPAS3-201ENST00000346562 ERICH6Q7L0X2 663 aa35.22■■■■□ 3.23
NPAS3-201ENST00000346562 CCER1Q8TC90 406 aaPredicted RBP35.17■■■■□ 3.22
NPAS3-201ENST00000346562 RANGAP1P46060 587 aaPredicted RBP35.1■■■■□ 3.21
NPAS3-201ENST00000346562 ATP1B4Q9UN42 357 aaPredicted RBP35.07■■■■□ 3.2
NPAS3-201ENST00000346562 PCGF6Q9BYE7 350 aa35.03■■■■□ 3.2
NPAS3-201ENST00000346562 CENPBP07199 599 aaPredicted RBP34.96■■■■□ 3.19
NPAS3-201ENST00000346562 ZEB1P37275 1124 aaPredicted RBP34.84■■■■□ 3.17
NPAS3-201ENST00000346562 TRIM41Q8WV44 630 aa34.8■■■■□ 3.16
NPAS3-201ENST00000346562 UBTFP17480 764 aaKnown RBP34.62■■■■□ 3.13
NPAS3-201ENST00000346562 NEFLP07196 543 aa34.52■■■■□ 3.12
NPAS3-201ENST00000346562 MYT1LQ9UL68 1186 aa34.08■■■■□ 3.05
NPAS3-201ENST00000346562 YTHDC1Q96MU7 727 aaKnown RBP34.04■■■■□ 3.04
NPAS3-201ENST00000346562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.87■■■■□ 3.01
NPAS3-201ENST00000346562 HNRNPUL2Q1KMD3 747 aaKnown RBP33.87■■■■□ 3.01
NPAS3-201ENST00000346562 DAXXQ9UER7 740 aaPredicted RBP33.8■■■■□ 3
NPAS3-201ENST00000346562 POLR3GLQ9BT43 218 aa33.69■■■□□ 2.98
NPAS3-201ENST00000346562 MYT1Q01538 1121 aa33.63■■■□□ 2.97
NPAS3-201ENST00000346562 PPARGC1BQ86YN6 1023 aaKnown RBP33.63■■■□□ 2.97
NPAS3-201ENST00000346562 ITGAEP38570 1179 aa33.56■■■□□ 2.96
NPAS3-201ENST00000346562 TRIM26Q12899 539 aaPredicted RBP33.46■■■□□ 2.95
NPAS3-201ENST00000346562 CHIC1Q5VXU3 224 aa33.31■■■□□ 2.92
NPAS3-201ENST00000346562 SLC4A1APQ9BWU0 796 aaKnown RBP33.31■■■□□ 2.92
NPAS3-201ENST00000346562 CNGB1Q14028 1251 aaPredicted RBP33.15■■■□□ 2.9
NPAS3-201ENST00000346562 ZNF316A6NFI3 1004 aaPredicted RBP32.95■■■□□ 2.87
NPAS3-201ENST00000346562 HRCP23327 699 aa32.95■■■□□ 2.86
NPAS3-201ENST00000346562 CLSPNQ9HAW4 1339 aa32.94■■■□□ 2.86
NPAS3-201ENST00000346562 FAM50AQ14320 339 aaKnown RBP32.76■■■□□ 2.83
NPAS3-201ENST00000346562 RTL5Q5HYW3 569 aaPredicted RBP32.75■■■□□ 2.83
NPAS3-201ENST00000346562 TRIM52Q96A61 297 aa32.73■■■□□ 2.83
NPAS3-201ENST00000346562 LOC105371045A0A1W2PR82 267 aa32.68■■■□□ 2.82
NPAS3-201ENST00000346562 ZBTB47Q9UFB7 747 aaPredicted RBP32.54■■■□□ 2.8
NPAS3-201ENST00000346562 DIEXFQ68CQ4 756 aaKnown RBP32.39■■■□□ 2.78
NPAS3-201ENST00000346562 NEUROD1Q13562 356 aa32.39■■■□□ 2.78
NPAS3-201ENST00000346562 ZNF326Q5BKZ1 582 aaKnown RBP32.33■■■□□ 2.77
NPAS3-201ENST00000346562 FBLN2P98095 1184 aa32.27■■■□□ 2.76
NPAS3-201ENST00000346562 PABPN1Q86U42 306 aaKnown RBP eCLIP32.25■■■□□ 2.75
NPAS3-201ENST00000346562 SLC24A1O60721 1099 aa32.25■■■□□ 2.75
NPAS3-201ENST00000346562 ANP32CO43423 234 aa32.23■■■□□ 2.75
NPAS3-201ENST00000346562 NEFMP07197 916 aa32.23■■■□□ 2.75
NPAS3-201ENST00000346562 BCANQ96GW7 911 aa32.22■■■□□ 2.75
NPAS3-201ENST00000346562 CANXP27824 592 aaKnown RBP32.19■■■□□ 2.74
NPAS3-201ENST00000346562 ABCC9O60706 1549 aa32.12■■■□□ 2.73
NPAS3-201ENST00000346562 CDK11AQ9UQ88 783 aaPredicted RBP32.03■■■□□ 2.72
NPAS3-201ENST00000346562 BCL11AQ9H165 835 aa31.92■■■□□ 2.7
NPAS3-201ENST00000346562 ESF1Q9H501 851 aaKnown RBP31.85■■■□□ 2.69
NPAS3-201ENST00000346562 ZNF777Q9ULD5 760 aaPredicted RBP31.74■■■□□ 2.67
NPAS3-201ENST00000346562 ARID3CA6NKF2 412 aa31.73■■■□□ 2.67
NPAS3-201ENST00000346562 P3H3Q8IVL6 736 aa31.68■■■□□ 2.66
NPAS3-201ENST00000346562 STAG3Q9UJ98 1225 aa31.62■■■□□ 2.65
NPAS3-201ENST00000346562 ANP32AP39687 249 aaKnown RBP31.58■■■□□ 2.65
NPAS3-201ENST00000346562 GTF3C3Q9Y5Q9 886 aa31.57■■■□□ 2.64
NPAS3-201ENST00000346562 CHGAP10645 457 aaKnown RBP31.48■■■□□ 2.63
NPAS3-201ENST00000346562 NPM1P06748 294 aaKnown RBP eCLIP31.46■■■□□ 2.63
NPAS3-201ENST00000346562 ANP32BQ92688 251 aaKnown RBP31.42■■■□□ 2.62
NPAS3-201ENST00000346562 CSRNP3Q8WYN3 585 aa31.41■■■□□ 2.62
NPAS3-201ENST00000346562 HSP90AA1P07900 732 aaKnown RBP31.36■■■□□ 2.61
NPAS3-201ENST00000346562 PLPPR3Q6T4P5 718 aa31.36■■■□□ 2.61
NPAS3-201ENST00000346562 NPM2Q86SE8 214 aaKnown RBP31.34■■■□□ 2.61
NPAS3-201ENST00000346562 TONSLQ96HA7 1378 aa31.32■■■□□ 2.6
NPAS3-201ENST00000346562 UPF2Q9HAU5 1272 aaKnown RBP31.31■■■□□ 2.6
NPAS3-201ENST00000346562 GOLGA6L2Q8N9W4 650 aaPredicted RBP31.08■■■□□ 2.57
NPAS3-201ENST00000346562 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.04■■■□□ 2.56
NPAS3-201ENST00000346562 WDR43Q15061 677 aaKnown RBP eCLIP31.01■■■□□ 2.55
NPAS3-201ENST00000346562 ACIN1Q9UKV3 1341 aaKnown RBP31■■■□□ 2.55
NPAS3-201ENST00000346562 HNRNPUQ00839 825 aaKnown RBP eCLIP31■■■□□ 2.55
NPAS3-201ENST00000346562 SCAF1Q9H7N4 1312 aaKnown RBP31■■■□□ 2.55
NPAS3-201ENST00000346562 FAM9BQ8IZU0 186 aa31■■■□□ 2.55
NPAS3-201ENST00000346562 FKBP8Q14318 412 aa30.96■■■□□ 2.55
NPAS3-201ENST00000346562 TMC1Q8TDI8 760 aa30.93■■■□□ 2.54
NPAS3-201ENST00000346562 TSPY4P0CV99 314 aa30.91■■■□□ 2.54
NPAS3-201ENST00000346562 TSPY10P0CW01 314 aa30.91■■■□□ 2.54
NPAS3-201ENST00000346562 SCRIBQ14160 1630 aa30.9■■■□□ 2.54
NPAS3-201ENST00000346562 SALL2Q9Y467 1007 aaPredicted RBP30.88■■■□□ 2.53
NPAS3-201ENST00000346562 CHIC2Q9UKJ5 165 aa30.88■■■□□ 2.53
NPAS3-201ENST00000346562 MYH16Q9H6N6 1097 aa30.87■■■□□ 2.53
NPAS3-201ENST00000346562 A0A0G2JS52 829 aa30.83■■■□□ 2.53
NPAS3-201ENST00000346562 CDK11BP21127 795 aaKnown RBP30.83■■■□□ 2.53
NPAS3-201ENST00000346562 DDX10Q13206 875 aaKnown RBP30.81■■■□□ 2.52
NPAS3-201ENST00000346562 CCDC136Q96JN2 1154 aa30.79■■■□□ 2.52
NPAS3-201ENST00000346562 KDM2AQ9Y2K7 1162 aa30.76■■■□□ 2.51
NPAS3-201ENST00000346562 CHMP7Q8WUX9 453 aaPredicted RBP30.74■■■□□ 2.51
NPAS3-201ENST00000346562 ZBTB7CA1YPR0 619 aa30.73■■■□□ 2.51
NPAS3-201ENST00000346562 MTUS2Q5JR59 1369 aa30.72■■■□□ 2.51
NPAS3-201ENST00000346562 EIF5BO60841 1220 aaKnown RBP30.72■■■□□ 2.51
NPAS3-201ENST00000346562 PPP1R15AO75807 674 aaPredicted RBP30.72■■■□□ 2.51
NPAS3-201ENST00000346562 C14orf37Q86TY3 774 aa30.68■■■□□ 2.5
NPAS3-201ENST00000346562 MRS2Q9HD23 443 aa30.66■■■□□ 2.5
NPAS3-201ENST00000346562 GLIPR1L2Q4G1C9 344 aa30.57■■■□□ 2.48
NPAS3-201ENST00000346562 HAP1P54257 671 aaPredicted RBP30.52■■■□□ 2.48
NPAS3-201ENST00000346562 NCLP19338 710 aaKnown RBP30.5■■■□□ 2.47
NPAS3-201ENST00000346562 PLEKHG5O94827 1062 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms