Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC8.29□□□□□ -1.08
SYNE1Q8NF91 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC8.28□□□□□ -1.08
SYNE1Q8NF91 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SYNE1Q8NF91 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
SYNE1Q8NF91 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC8.28□□□□□ -1.08
SYNE1Q8NF91 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
SYNE1Q8NF91 HGH1-207ENST00000628266 258 ntTSL 5 BASIC8.27□□□□□ -1.09
SYNE1Q8NF91 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SYNE1Q8NF91 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
SYNE1Q8NF91 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
SYNE1Q8NF91 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 DENR-202ENST00000455982 1052 ntTSL 5 BASIC8.26□□□□□ -1.09
SYNE1Q8NF91 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
SYNE1Q8NF91 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
SYNE1Q8NF91 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC8.25□□□□□ -1.09
SYNE1Q8NF91 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC8.25□□□□□ -1.09
SYNE1Q8NF91 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC8.25□□□□□ -1.09
SYNE1Q8NF91 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
SYNE1Q8NF91 AC005559.1-201ENST00000589661 871 ntBASIC8.25□□□□□ -1.09
SYNE1Q8NF91 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
SYNE1Q8NF91 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
SYNE1Q8NF91 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
SYNE1Q8NF91 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
SYNE1Q8NF91 WASH5P-204ENST00000632292 975 ntBASIC8.24□□□□□ -1.09
SYNE1Q8NF91 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
SYNE1Q8NF91 AC021231.2-201ENST00000594613 730 ntBASIC8.22□□□□□ -1.09
SYNE1Q8NF91 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC8.22□□□□□ -1.09
SYNE1Q8NF91 AC044849.2-201ENST00000606596 710 ntBASIC8.22□□□□□ -1.09
SYNE1Q8NF91 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
SYNE1Q8NF91 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC8.22□□□□□ -1.09
SYNE1Q8NF91 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.09
SYNE1Q8NF91 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC8.21□□□□□ -1.1
SYNE1Q8NF91 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
SYNE1Q8NF91 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
SYNE1Q8NF91 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.1
SYNE1Q8NF91 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
SYNE1Q8NF91 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
SYNE1Q8NF91 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
SYNE1Q8NF91 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
SYNE1Q8NF91 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 RPS2-202ENST00000526522 924 ntTSL 2 BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC8.19□□□□□ -1.1
SYNE1Q8NF91 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC8.18□□□□□ -1.1
SYNE1Q8NF91 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC8.17□□□□□ -1.1
SYNE1Q8NF91 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
SYNE1Q8NF91 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC8.17□□□□□ -1.1
SYNE1Q8NF91 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
SYNE1Q8NF91 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SYNE1Q8NF91 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SYNE1Q8NF91 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SYNE1Q8NF91 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.1
SYNE1Q8NF91 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SYNE1Q8NF91 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SYNE1Q8NF91 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SYNE1Q8NF91 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC8.15□□□□□ -1.1
SYNE1Q8NF91 ZNRF2P2-203ENST00000454624 420 ntBASIC8.15□□□□□ -1.11
SYNE1Q8NF91 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.11
SYNE1Q8NF91 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC8.15□□□□□ -1.11
SYNE1Q8NF91 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
SYNE1Q8NF91 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
SYNE1Q8NF91 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
SYNE1Q8NF91 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
SYNE1Q8NF91 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC8.14□□□□□ -1.11
SYNE1Q8NF91 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC8.14□□□□□ -1.11
SYNE1Q8NF91 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
SYNE1Q8NF91 RNF166-209ENST00000567844 633 ntTSL 5 BASIC8.13□□□□□ -1.11
SYNE1Q8NF91 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SYNE1Q8NF91 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
SYNE1Q8NF91 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC8.13□□□□□ -1.11
SYNE1Q8NF91 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms