RNA–Protein interactions for RNA: ENST00000371320.7

SSBP3-204, Transcript of single stranded DNA binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP3, Length 2,077 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-204ENST00000371320 NISCHQ9Y2I1 1504 aa61.6■■■■■ 7.45
SSBP3-204ENST00000371320 CCDC180Q9P1Z9 1646 aa52.76■■■■■ 6.04
SSBP3-204ENST00000371320 ZCCHC6Q5VYS8 1495 aaKnown RBP52.01■■■■■ 5.92
SSBP3-204ENST00000371320 SHROOM4Q9ULL8 1493 aa51.79■■■■■ 5.88
SSBP3-204ENST00000371320 DCAF8L2P0C7V8 631 aa50.93■■■■■ 5.74
SSBP3-204ENST00000371320 DCAF1Q9Y4B6 1507 aa50.72■■■■■ 5.71
SSBP3-204ENST00000371320 SUPT5HO00267 1087 aaKnown RBP50.58■■■■■ 5.69
SSBP3-204ENST00000371320 MYO15BQ96JP2 1530 aa49.5■■■■■ 5.52
SSBP3-204ENST00000371320 ABCC9O60706 1549 aa49.28■■■■■ 5.48
SSBP3-204ENST00000371320 SCRIBQ14160 1630 aa49.12■■■■■ 5.45
SSBP3-204ENST00000371320 CHIC1Q5VXU3 224 aa49.03■■■■■ 5.44
SSBP3-204ENST00000371320 NACADO15069 1562 aa48.9■■■■■ 5.42
SSBP3-204ENST00000371320 RSF1Q96T23 1441 aaPredicted RBP48.48■■■■■ 5.35
SSBP3-204ENST00000371320 RB1CC1Q8TDY2 1594 aa48.18■■■■■ 5.3
SSBP3-204ENST00000371320 CECR2Q9BXF3 1484 aa47.94■■■■■ 5.26
SSBP3-204ENST00000371320 MROH2BQ7Z745 1585 aa47.77■■■■■ 5.24
SSBP3-204ENST00000371320 WIZO95785 1651 aa47.46■■■■■ 5.19
SSBP3-204ENST00000371320 LOC105371045A0A1W2PR82 267 aa47.41■■■■■ 5.18
SSBP3-204ENST00000371320 BAZ1AQ9NRL2 1556 aaPredicted RBP47.4■■■■■ 5.18
SSBP3-204ENST00000371320 TRIM41Q8WV44 630 aa47.3■■■■■ 5.16
SSBP3-204ENST00000371320 UNC13AQ9UPW8 1703 aa47.29■■■■■ 5.16
SSBP3-204ENST00000371320 SMARCA4P51532 1647 aa47.02■■■■■ 5.12
SSBP3-204ENST00000371320 TOP2AP11388 1531 aaKnown RBP46.85■■■■■ 5.09
SSBP3-204ENST00000371320 PCGF6Q9BYE7 350 aa46.83■■■■■ 5.09
SSBP3-204ENST00000371320 BICRAQ9NZM4 1560 aa46.78■■■■■ 5.08
SSBP3-204ENST00000371320 PABPN1Q86U42 306 aaKnown RBP eCLIP46.73■■■■■ 5.07
SSBP3-204ENST00000371320 FAM9AQ8IZU1 332 aaPredicted RBP46.69■■■■■ 5.07
SSBP3-204ENST00000371320 EIF4G1Q04637 1599 aaKnown RBP46.66■■■■■ 5.06
SSBP3-204ENST00000371320 HRCP23327 699 aa46.57■■■■■ 5.05
SSBP3-204ENST00000371320 CCDC88BA6NC98 1476 aa46.56■■■■■ 5.04
SSBP3-204ENST00000371320 SMARCA2P51531 1590 aa46.52■■■■■ 5.04
SSBP3-204ENST00000371320 TRIM26Q12899 539 aaPredicted RBP46.26■■■■■ 5
SSBP3-204ENST00000371320 PEG3Q9GZU2 1588 aa46.25■■■■■ 4.99
SSBP3-204ENST00000371320 EHMT2Q96KQ7 1210 aa46.16■■■■■ 4.98
SSBP3-204ENST00000371320 ABCC8Q09428 1581 aa46.15■■■■■ 4.98
SSBP3-204ENST00000371320 ATAD2BQ9ULI0 1458 aa45.94■■■■■ 4.94
SSBP3-204ENST00000371320 BAZ1BQ9UIG0 1483 aaKnown RBP45.79■■■■■ 4.92
SSBP3-204ENST00000371320 SOGA1O94964 1423 aa45.63■■■■■ 4.9
SSBP3-204ENST00000371320 WRNQ14191 1432 aaPredicted RBP eCLIP45.58■■■■■ 4.897e-6■■■■■ 31.3
SSBP3-204ENST00000371320 EEA1Q15075 1411 aa45.57■■■■■ 4.88
SSBP3-204ENST00000371320 PPARGC1BQ86YN6 1023 aaKnown RBP45.47■■■■■ 4.87
SSBP3-204ENST00000371320 CSRNP3Q8WYN3 585 aa45.42■■■■■ 4.86
SSBP3-204ENST00000371320 RUSC2Q8N2Y8 1516 aa45.38■■■■■ 4.86
SSBP3-204ENST00000371320 SYNJ1O43426 1573 aa45.31■■■■■ 4.84
SSBP3-204ENST00000371320 TNIKQ9UKE5 1360 aa45.29■■■■■ 4.84
SSBP3-204ENST00000371320 CEP162Q5TB80 1403 aa45.23■■■■■ 4.83
SSBP3-204ENST00000371320 NCAPD3P42695 1498 aa45.21■■■■■ 4.83
SSBP3-204ENST00000371320 HMGXB3Q12766 1538 aa45.19■■■■■ 4.82
SSBP3-204ENST00000371320 GOLGA3Q08378 1498 aa45.12■■■■■ 4.81
SSBP3-204ENST00000371320 UBTFP17480 764 aaKnown RBP45.11■■■■■ 4.81
SSBP3-204ENST00000371320 ZEB1P37275 1124 aaPredicted RBP45.1■■■■■ 4.81
SSBP3-204ENST00000371320 CEP164Q9UPV0 1460 aa44.95■■■■■ 4.79
SSBP3-204ENST00000371320 TOP2BQ02880 1626 aa44.91■■■■■ 4.78
SSBP3-204ENST00000371320 KIF21BO75037 1637 aa44.89■■■■■ 4.78
SSBP3-204ENST00000371320 BIVM-ERCC5R4GMW8 1640 aa44.77■■■■■ 4.76
SSBP3-204ENST00000371320 CFTRP13569 1480 aa44.66■■■■■ 4.74
SSBP3-204ENST00000371320 RAPGEF2Q9Y4G8 1499 aa44.58■■■■■ 4.73
SSBP3-204ENST00000371320 TTBK1Q5TCY1 1321 aaPredicted RBP44.56■■■■■ 4.72
SSBP3-204ENST00000371320 CUX1P39880 1505 aa44.54■■■■■ 4.72
SSBP3-204ENST00000371320 CLIP1P30622 1438 aa44.53■■■■■ 4.72
SSBP3-204ENST00000371320 CC2D2AQ9P2K1 1620 aa44.52■■■■■ 4.72
SSBP3-204ENST00000371320 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP44.36■■■■■ 4.69
SSBP3-204ENST00000371320 PRXQ9BXM0 1461 aa44.31■■■■■ 4.68
SSBP3-204ENST00000371320 ERICH3Q5RHP9 1530 aa44.3■■■■■ 4.68
SSBP3-204ENST00000371320 CCER1Q8TC90 406 aaPredicted RBP44.3■■■■■ 4.68
SSBP3-204ENST00000371320 VPS8Q8N3P4 1428 aa44.3■■■■■ 4.68
SSBP3-204ENST00000371320 PRDM2Q13029 1718 aa44.3■■■■■ 4.68
SSBP3-204ENST00000371320 KIF27Q86VH2 1401 aa44.27■■■■■ 4.68
SSBP3-204ENST00000371320 CADPSQ9ULU8 1353 aa44.26■■■■■ 4.68
SSBP3-204ENST00000371320 RANGAP1P46060 587 aaPredicted RBP44.15■■■■■ 4.66
SSBP3-204ENST00000371320 APLP2Q06481 763 aa44.07■■■■■ 4.65
SSBP3-204ENST00000371320 CUX2O14529 1486 aa43.88■■■■■ 4.62
SSBP3-204ENST00000371320 ARAP1Q96P48 1450 aa43.87■■■■■ 4.61
SSBP3-204ENST00000371320 FGD5Q6ZNL6 1462 aa43.83■■■■■ 4.61
SSBP3-204ENST00000371320 FANCD2Q9BXW9 1451 aa43.8■■■■■ 4.6
SSBP3-204ENST00000371320 IGF1RP08069 1367 aa43.79■■■■■ 4.6
SSBP3-204ENST00000371320 HNRNPUL2Q1KMD3 747 aaKnown RBP43.69■■■■■ 4.59
SSBP3-204ENST00000371320 CARMIL1Q5VZK9 1371 aa43.6■■■■■ 4.57
SSBP3-204ENST00000371320 ARHGAP35Q9NRY4 1499 aa43.59■■■■■ 4.57
SSBP3-204ENST00000371320 DNAJC5BQ9UF47 199 aa43.58■■■■■ 4.57
SSBP3-204ENST00000371320 DNMBPQ6XZF7 1577 aa43.56■■■■■ 4.56
SSBP3-204ENST00000371320 NESP48681 1621 aa43.53■■■■■ 4.56
SSBP3-204ENST00000371320 TOPBP1Q92547 1522 aa43.46■■■■■ 4.55
SSBP3-204ENST00000371320 KANK4Q5T7N3 995 aaPredicted RBP43.46■■■■■ 4.55
SSBP3-204ENST00000371320 POLA1P09884 1462 aaPredicted RBP43.39■■■■■ 4.54
SSBP3-204ENST00000371320 ABCA10Q8WWZ4 1543 aa43.38■■■■■ 4.54
SSBP3-204ENST00000371320 RAD54L2Q9Y4B4 1467 aa43.38■■■■■ 4.54
SSBP3-204ENST00000371320 LAMC3Q9Y6N6 1575 aa43.37■■■■■ 4.53
SSBP3-204ENST00000371320 RRBP1Q9P2E9 1410 aaKnown RBP43.2■■■■■ 4.51
SSBP3-204ENST00000371320 URB2Q14146 1524 aaKnown RBP43.17■■■■■ 4.5
SSBP3-204ENST00000371320 PDS5BQ9NTI5 1447 aa43.11■■■■■ 4.49
SSBP3-204ENST00000371320 DIEXFQ68CQ4 756 aaKnown RBP43.1■■■■■ 4.49
SSBP3-204ENST00000371320 MAP3K1Q13233 1512 aa43.1■■■■■ 4.49
SSBP3-204ENST00000371320 CUL7Q14999 1698 aa43.09■■■■■ 4.49
SSBP3-204ENST00000371320 TIAM1Q13009 1591 aa43.05■■■■■ 4.48
SSBP3-204ENST00000371320 FHAD1B1AJZ9 1412 aa43.04■■■■■ 4.48
SSBP3-204ENST00000371320 CCNB3Q8WWL7 1395 aa43.03■■■■■ 4.48
SSBP3-204ENST00000371320 ZNF316A6NFI3 1004 aaPredicted RBP43■■■■■ 4.47
SSBP3-204ENST00000371320 WDR97A6NE52 1622 aa42.99■■■■■ 4.47
SSBP3-204ENST00000371320 P3H3Q8IVL6 736 aa42.94■■■■■ 4.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms