Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
SYNE1Q8NF91 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC10.21□□□□□ -0.77
SYNE1Q8NF91 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC10.2□□□□□ -0.78
SYNE1Q8NF91 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
SYNE1Q8NF91 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
SYNE1Q8NF91 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
SYNE1Q8NF91 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
SYNE1Q8NF91 AL356512.1-201ENST00000607453 1739 ntBASIC9.94□□□□□ -0.82
SYNE1Q8NF91 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
SYNE1Q8NF91 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
SYNE1Q8NF91 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.84
SYNE1Q8NF91 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
SYNE1Q8NF91 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
SYNE1Q8NF91 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
SYNE1Q8NF91 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC9.73□□□□□ -0.85
SYNE1Q8NF91 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC9.73□□□□□ -0.85
SYNE1Q8NF91 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
SYNE1Q8NF91 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC9.69□□□□□ -0.86
SYNE1Q8NF91 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC9.65□□□□□ -0.86
SYNE1Q8NF91 INO80B-203ENST00000409917 796 ntTSL 2 BASIC9.61□□□□□ -0.87
SYNE1Q8NF91 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
SYNE1Q8NF91 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
SYNE1Q8NF91 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
SYNE1Q8NF91 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC9.58□□□□□ -0.88
SYNE1Q8NF91 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SYNE1Q8NF91 ZNRF2P1-201ENST00000441407 443 ntBASIC9.52□□□□□ -0.89
SYNE1Q8NF91 HES6-203ENST00000409160 1600 ntTSL 2 BASIC9.5□□□□□ -0.89
SYNE1Q8NF91 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SYNE1Q8NF91 AC006077.2-201ENST00000623591 457 ntBASIC9.45□□□□□ -0.9
SYNE1Q8NF91 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
SYNE1Q8NF91 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
SYNE1Q8NF91 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC9.41□□□□□ -0.9
SYNE1Q8NF91 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC9.4□□□□□ -0.91
SYNE1Q8NF91 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
SYNE1Q8NF91 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC9.38□□□□□ -0.91
SYNE1Q8NF91 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
SYNE1Q8NF91 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
SYNE1Q8NF91 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SYNE1Q8NF91 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC9.33□□□□□ -0.92
SYNE1Q8NF91 AC015813.7-201ENST00000623294 581 ntBASIC9.33□□□□□ -0.92
SYNE1Q8NF91 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SYNE1Q8NF91 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.93
SYNE1Q8NF91 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
SYNE1Q8NF91 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
SYNE1Q8NF91 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC9.19□□□□□ -0.94
SYNE1Q8NF91 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC9.19□□□□□ -0.94
SYNE1Q8NF91 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
SYNE1Q8NF91 AP002365.1-201ENST00000603448 772 ntBASIC9.16□□□□□ -0.94
SYNE1Q8NF91 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC9.15□□□□□ -0.94
SYNE1Q8NF91 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
SYNE1Q8NF91 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC9.14□□□□□ -0.95
SYNE1Q8NF91 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC9.13□□□□□ -0.95
SYNE1Q8NF91 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
SYNE1Q8NF91 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC9.12□□□□□ -0.95
SYNE1Q8NF91 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC9.12□□□□□ -0.95
SYNE1Q8NF91 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SYNE1Q8NF91 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC9.1□□□□□ -0.95
SYNE1Q8NF91 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC9.1□□□□□ -0.95
SYNE1Q8NF91 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
SYNE1Q8NF91 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
SYNE1Q8NF91 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
SYNE1Q8NF91 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC9.05□□□□□ -0.96
SYNE1Q8NF91 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC9.04□□□□□ -0.96
SYNE1Q8NF91 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC9.04□□□□□ -0.96
SYNE1Q8NF91 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
SYNE1Q8NF91 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.96
SYNE1Q8NF91 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC9.02□□□□□ -0.97
SYNE1Q8NF91 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC9.02□□□□□ -0.97
SYNE1Q8NF91 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
SYNE1Q8NF91 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
SYNE1Q8NF91 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
SYNE1Q8NF91 DYNLL1-208ENST00000550178 581 ntBASIC9□□□□□ -0.97
SYNE1Q8NF91 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC9□□□□□ -0.97
SYNE1Q8NF91 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SYNE1Q8NF91 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
SYNE1Q8NF91 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
SYNE1Q8NF91 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC8.98□□□□□ -0.97
SYNE1Q8NF91 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
SYNE1Q8NF91 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
SYNE1Q8NF91 AL031258.1-201ENST00000623562 325 ntBASIC8.96□□□□□ -0.98
SYNE1Q8NF91 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SYNE1Q8NF91 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC8.95□□□□□ -0.98
SYNE1Q8NF91 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC8.95□□□□□ -0.98
SYNE1Q8NF91 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SYNE1Q8NF91 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
SYNE1Q8NF91 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC8.92□□□□□ -0.98
SYNE1Q8NF91 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC8.92□□□□□ -0.98
SYNE1Q8NF91 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC8.92□□□□□ -0.98
SYNE1Q8NF91 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC8.92□□□□□ -0.98
SYNE1Q8NF91 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC8.91□□□□□ -0.98
SYNE1Q8NF91 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
SYNE1Q8NF91 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
SYNE1Q8NF91 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SYNE1Q8NF91 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC8.89□□□□□ -0.99
SYNE1Q8NF91 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SYNE1Q8NF91 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC8.88□□□□□ -0.99
SYNE1Q8NF91 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
SYNE1Q8NF91 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SYNE1Q8NF91 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
SYNE1Q8NF91 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms