Protein–RNA interactions for Protein: P04437

TCRA, T-cell receptor alpha chain V region CTL-L17, humanhuman

Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRAP04437 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TCRAP04437 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRAP04437 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TCRAP04437 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TCRAP04437 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TCRAP04437 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TCRAP04437 AC139426.1-201ENST00000568218 2529 ntBASIC20.63■□□□□ 0.89
TCRAP04437 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TCRAP04437 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TCRAP04437 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
TCRAP04437 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.61■□□□□ 0.89
TCRAP04437 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TCRAP04437 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TCRAP04437 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.6■□□□□ 0.89
TCRAP04437 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRAP04437 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
TCRAP04437 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TCRAP04437 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.59■□□□□ 0.89
TCRAP04437 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TCRAP04437 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TCRAP04437 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.57■□□□□ 0.88
TCRAP04437 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TCRAP04437 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRAP04437 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRAP04437 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRAP04437 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRAP04437 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TCRAP04437 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRAP04437 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRAP04437 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TCRAP04437 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRAP04437 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRAP04437 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TCRAP04437 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
TCRAP04437 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
TCRAP04437 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TCRAP04437 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TCRAP04437 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TCRAP04437 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.49■□□□□ 0.87
TCRAP04437 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TCRAP04437 ST7-AS1-201ENST00000456775 1889 ntBASIC20.48■□□□□ 0.87
TCRAP04437 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TCRAP04437 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TCRAP04437 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRAP04437 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRAP04437 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TCRAP04437 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRAP04437 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.47■□□□□ 0.87
TCRAP04437 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
TCRAP04437 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.46■□□□□ 0.87
TCRAP04437 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRAP04437 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRAP04437 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TCRAP04437 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRAP04437 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRAP04437 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.43■□□□□ 0.86
TCRAP04437 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRAP04437 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.42■□□□□ 0.86
TCRAP04437 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TCRAP04437 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TCRAP04437 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
TCRAP04437 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.4■□□□□ 0.86
TCRAP04437 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TCRAP04437 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TCRAP04437 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TCRAP04437 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
TCRAP04437 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.39■□□□□ 0.85
TCRAP04437 AL161658.1-201ENST00000623641 1967 ntBASIC20.38■□□□□ 0.85
TCRAP04437 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TCRAP04437 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TCRAP04437 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.37■□□□□ 0.85
TCRAP04437 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.37■□□□□ 0.85
TCRAP04437 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TCRAP04437 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TCRAP04437 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.35■□□□□ 0.85
TCRAP04437 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TCRAP04437 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TCRAP04437 AC006077.2-201ENST00000623591 457 ntBASIC20.34■□□□□ 0.85
TCRAP04437 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TCRAP04437 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
TCRAP04437 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TCRAP04437 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TCRAP04437 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.33■□□□□ 0.85
TCRAP04437 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TCRAP04437 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
TCRAP04437 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TCRAP04437 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TCRAP04437 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TCRAP04437 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TCRAP04437 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TCRAP04437 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TCRAP04437 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.31■□□□□ 0.84
TCRAP04437 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TCRAP04437 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TCRAP04437 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.3■□□□□ 0.84
TCRAP04437 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TCRAP04437 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.29■□□□□ 0.84
TCRAP04437 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TCRAP04437 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TCRAP04437 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms