Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC29.17■■■□□ 2.26
PCDHA3Q9Y5H8 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
PCDHA3Q9Y5H8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.16■■■□□ 2.26
PCDHA3Q9Y5H8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.15■■■□□ 2.26
PCDHA3Q9Y5H8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
PCDHA3Q9Y5H8 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
PCDHA3Q9Y5H8 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.14■■■□□ 2.26
PCDHA3Q9Y5H8 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC29.14■■■□□ 2.25
PCDHA3Q9Y5H8 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
PCDHA3Q9Y5H8 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHA3Q9Y5H8 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHA3Q9Y5H8 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHA3Q9Y5H8 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHA3Q9Y5H8 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
PCDHA3Q9Y5H8 ZNRF2P1-201ENST00000441407 443 ntBASIC29.11■■■□□ 2.25
PCDHA3Q9Y5H8 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHA3Q9Y5H8 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHA3Q9Y5H8 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.09■■■□□ 2.25
PCDHA3Q9Y5H8 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PCDHA3Q9Y5H8 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PCDHA3Q9Y5H8 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PCDHA3Q9Y5H8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
PCDHA3Q9Y5H8 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
PCDHA3Q9Y5H8 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
PCDHA3Q9Y5H8 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.07■■■□□ 2.24
PCDHA3Q9Y5H8 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PCDHA3Q9Y5H8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.05■■■□□ 2.24
PCDHA3Q9Y5H8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.04■■■□□ 2.24
PCDHA3Q9Y5H8 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.04■■■□□ 2.24
PCDHA3Q9Y5H8 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.04■■■□□ 2.24
PCDHA3Q9Y5H8 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PCDHA3Q9Y5H8 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.03■■■□□ 2.24
PCDHA3Q9Y5H8 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PCDHA3Q9Y5H8 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29■■■□□ 2.23
PCDHA3Q9Y5H8 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
PCDHA3Q9Y5H8 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.98■■■□□ 2.23
PCDHA3Q9Y5H8 AC120057.4-201ENST00000624722 1615 ntBASIC28.98■■■□□ 2.23
PCDHA3Q9Y5H8 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC28.97■■■□□ 2.23
PCDHA3Q9Y5H8 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
PCDHA3Q9Y5H8 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC28.94■■■□□ 2.22
PCDHA3Q9Y5H8 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
PCDHA3Q9Y5H8 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PCDHA3Q9Y5H8 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.93■■■□□ 2.22
PCDHA3Q9Y5H8 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
PCDHA3Q9Y5H8 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
PCDHA3Q9Y5H8 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.91■■■□□ 2.22
PCDHA3Q9Y5H8 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC28.91■■■□□ 2.22
PCDHA3Q9Y5H8 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
PCDHA3Q9Y5H8 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.88■■■□□ 2.21
PCDHA3Q9Y5H8 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.88■■■□□ 2.21
PCDHA3Q9Y5H8 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
PCDHA3Q9Y5H8 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA3Q9Y5H8 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
PCDHA3Q9Y5H8 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA3Q9Y5H8 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.83■■■□□ 2.21
PCDHA3Q9Y5H8 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
PCDHA3Q9Y5H8 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
PCDHA3Q9Y5H8 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.8■■■□□ 2.2
PCDHA3Q9Y5H8 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PCDHA3Q9Y5H8 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.79■■■□□ 2.2
PCDHA3Q9Y5H8 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PCDHA3Q9Y5H8 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCDHA3Q9Y5H8 DYNLL1-208ENST00000550178 581 ntBASIC28.76■■■□□ 2.19
PCDHA3Q9Y5H8 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PCDHA3Q9Y5H8 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCDHA3Q9Y5H8 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.74■■■□□ 2.19
PCDHA3Q9Y5H8 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
PCDHA3Q9Y5H8 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.73■■■□□ 2.19
PCDHA3Q9Y5H8 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
PCDHA3Q9Y5H8 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
PCDHA3Q9Y5H8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
PCDHA3Q9Y5H8 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PCDHA3Q9Y5H8 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCDHA3Q9Y5H8 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.66■■■□□ 2.18
PCDHA3Q9Y5H8 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.66■■■□□ 2.18
PCDHA3Q9Y5H8 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.66■■■□□ 2.18
PCDHA3Q9Y5H8 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCDHA3Q9Y5H8 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
PCDHA3Q9Y5H8 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
PCDHA3Q9Y5H8 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PCDHA3Q9Y5H8 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
PCDHA3Q9Y5H8 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCDHA3Q9Y5H8 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.64■■■□□ 2.18
PCDHA3Q9Y5H8 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PCDHA3Q9Y5H8 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PCDHA3Q9Y5H8 AL031258.1-201ENST00000623562 325 ntBASIC28.6■■■□□ 2.17
PCDHA3Q9Y5H8 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
PCDHA3Q9Y5H8 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.56■■■□□ 2.16
PCDHA3Q9Y5H8 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
PCDHA3Q9Y5H8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
PCDHA3Q9Y5H8 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.55■■■□□ 2.16
PCDHA3Q9Y5H8 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
PCDHA3Q9Y5H8 ABCB10P1-201ENST00000614297 2181 ntBASIC28.54■■■□□ 2.16
PCDHA3Q9Y5H8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC28.53■■■□□ 2.16
PCDHA3Q9Y5H8 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
PCDHA3Q9Y5H8 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PCDHA3Q9Y5H8 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PCDHA3Q9Y5H8 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
PCDHA3Q9Y5H8 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC28.51■■■□□ 2.15
PCDHA3Q9Y5H8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms