Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
PCDHA3Q9Y5H8 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.08■■■■□ 3.21
PCDHA3Q9Y5H8 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.71■■■■□ 3.15
PCDHA3Q9Y5H8 AL356512.1-201ENST00000607453 1739 ntBASIC34.62■■■■□ 3.13
PCDHA3Q9Y5H8 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.55■■■■□ 3.12
PCDHA3Q9Y5H8 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.39■■■■□ 3.1
PCDHA3Q9Y5H8 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC34.23■■■■□ 3.07
PCDHA3Q9Y5H8 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC34.22■■■■□ 3.07
PCDHA3Q9Y5H8 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
PCDHA3Q9Y5H8 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.83■■■■□ 3.01
PCDHA3Q9Y5H8 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
PCDHA3Q9Y5H8 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.58■■■□□ 2.97
PCDHA3Q9Y5H8 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
PCDHA3Q9Y5H8 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC33.25■■■□□ 2.91
PCDHA3Q9Y5H8 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
PCDHA3Q9Y5H8 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC33.18■■■□□ 2.9
PCDHA3Q9Y5H8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
PCDHA3Q9Y5H8 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.98■■■□□ 2.87
PCDHA3Q9Y5H8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
PCDHA3Q9Y5H8 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.92■■■□□ 2.86
PCDHA3Q9Y5H8 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.91■■■□□ 2.86
PCDHA3Q9Y5H8 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.84■■■□□ 2.85
PCDHA3Q9Y5H8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
PCDHA3Q9Y5H8 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.8
PCDHA3Q9Y5H8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
PCDHA3Q9Y5H8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
PCDHA3Q9Y5H8 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
PCDHA3Q9Y5H8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.31■■■□□ 2.76
PCDHA3Q9Y5H8 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.27■■■□□ 2.76
PCDHA3Q9Y5H8 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
PCDHA3Q9Y5H8 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.18■■■□□ 2.74
PCDHA3Q9Y5H8 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.18■■■□□ 2.74
PCDHA3Q9Y5H8 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.13■■■□□ 2.73
PCDHA3Q9Y5H8 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC32.13■■■□□ 2.73
PCDHA3Q9Y5H8 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.11■■■□□ 2.73
PCDHA3Q9Y5H8 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC32.01■■■□□ 2.72
PCDHA3Q9Y5H8 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
PCDHA3Q9Y5H8 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
PCDHA3Q9Y5H8 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.85■■■□□ 2.69
PCDHA3Q9Y5H8 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.67
PCDHA3Q9Y5H8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.75■■■□□ 2.67
PCDHA3Q9Y5H8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
PCDHA3Q9Y5H8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
PCDHA3Q9Y5H8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
PCDHA3Q9Y5H8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
PCDHA3Q9Y5H8 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
PCDHA3Q9Y5H8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PCDHA3Q9Y5H8 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.41■■■□□ 2.62
PCDHA3Q9Y5H8 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.41■■■□□ 2.62
PCDHA3Q9Y5H8 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
PCDHA3Q9Y5H8 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.37■■■□□ 2.61
PCDHA3Q9Y5H8 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.36■■■□□ 2.61
PCDHA3Q9Y5H8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PCDHA3Q9Y5H8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.26■■■□□ 2.59
PCDHA3Q9Y5H8 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
PCDHA3Q9Y5H8 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PCDHA3Q9Y5H8 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
PCDHA3Q9Y5H8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
PCDHA3Q9Y5H8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCDHA3Q9Y5H8 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PCDHA3Q9Y5H8 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
PCDHA3Q9Y5H8 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
PCDHA3Q9Y5H8 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
PCDHA3Q9Y5H8 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCDHA3Q9Y5H8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.88■■■□□ 2.53
PCDHA3Q9Y5H8 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.84■■■□□ 2.53
PCDHA3Q9Y5H8 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
PCDHA3Q9Y5H8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
PCDHA3Q9Y5H8 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
PCDHA3Q9Y5H8 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
PCDHA3Q9Y5H8 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
PCDHA3Q9Y5H8 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
PCDHA3Q9Y5H8 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PCDHA3Q9Y5H8 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PCDHA3Q9Y5H8 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PCDHA3Q9Y5H8 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
PCDHA3Q9Y5H8 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PCDHA3Q9Y5H8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
PCDHA3Q9Y5H8 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
PCDHA3Q9Y5H8 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.52■■■□□ 2.48
PCDHA3Q9Y5H8 AC145285.7-201ENST00000614819 1539 ntBASIC30.5■■■□□ 2.47
PCDHA3Q9Y5H8 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
PCDHA3Q9Y5H8 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.49■■■□□ 2.47
PCDHA3Q9Y5H8 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
PCDHA3Q9Y5H8 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.45■■■□□ 2.46
PCDHA3Q9Y5H8 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
PCDHA3Q9Y5H8 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.46
PCDHA3Q9Y5H8 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
PCDHA3Q9Y5H8 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.43■■■□□ 2.46
PCDHA3Q9Y5H8 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
PCDHA3Q9Y5H8 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.39■■■□□ 2.46
PCDHA3Q9Y5H8 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
PCDHA3Q9Y5H8 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
PCDHA3Q9Y5H8 AC015813.7-201ENST00000623294 581 ntBASIC30.32■■■□□ 2.44
PCDHA3Q9Y5H8 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
PCDHA3Q9Y5H8 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
PCDHA3Q9Y5H8 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
PCDHA3Q9Y5H8 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
PCDHA3Q9Y5H8 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
PCDHA3Q9Y5H8 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms