Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC27.31■■□□□ 1.96
VRK3Q8IV63 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
VRK3Q8IV63 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
VRK3Q8IV63 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.29■■□□□ 1.96
VRK3Q8IV63 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
VRK3Q8IV63 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
VRK3Q8IV63 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
VRK3Q8IV63 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
VRK3Q8IV63 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.26■■□□□ 1.95
VRK3Q8IV63 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27.26■■□□□ 1.95
VRK3Q8IV63 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC27.25■■□□□ 1.95
VRK3Q8IV63 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
VRK3Q8IV63 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
VRK3Q8IV63 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
VRK3Q8IV63 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC27.24■■□□□ 1.95
VRK3Q8IV63 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC27.23■■□□□ 1.95
VRK3Q8IV63 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC27.22■■□□□ 1.95
VRK3Q8IV63 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
VRK3Q8IV63 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
VRK3Q8IV63 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.21■■□□□ 1.95
VRK3Q8IV63 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
VRK3Q8IV63 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
VRK3Q8IV63 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.19■■□□□ 1.94
VRK3Q8IV63 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
VRK3Q8IV63 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC27.18■■□□□ 1.94
VRK3Q8IV63 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
VRK3Q8IV63 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.17■■□□□ 1.94
VRK3Q8IV63 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
VRK3Q8IV63 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC27.15■■□□□ 1.94
VRK3Q8IV63 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.13■■□□□ 1.93
VRK3Q8IV63 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC27.12■■□□□ 1.93
VRK3Q8IV63 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
VRK3Q8IV63 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
VRK3Q8IV63 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
VRK3Q8IV63 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27.07■■□□□ 1.92
VRK3Q8IV63 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VRK3Q8IV63 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.06■■□□□ 1.92
VRK3Q8IV63 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC27.06■■□□□ 1.92
VRK3Q8IV63 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
VRK3Q8IV63 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC27.05■■□□□ 1.92
VRK3Q8IV63 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
VRK3Q8IV63 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC27.04■■□□□ 1.92
VRK3Q8IV63 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC27.02■■□□□ 1.92
VRK3Q8IV63 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
VRK3Q8IV63 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
VRK3Q8IV63 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
VRK3Q8IV63 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.98■■□□□ 1.91
VRK3Q8IV63 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
VRK3Q8IV63 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
VRK3Q8IV63 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.95■■□□□ 1.9
VRK3Q8IV63 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VRK3Q8IV63 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VRK3Q8IV63 AC120057.4-201ENST00000624722 1615 ntBASIC26.94■■□□□ 1.9
VRK3Q8IV63 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.94■■□□□ 1.9
VRK3Q8IV63 RARRES2P7-201ENST00000567349 469 ntBASIC26.94■■□□□ 1.9
VRK3Q8IV63 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
VRK3Q8IV63 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
VRK3Q8IV63 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
VRK3Q8IV63 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
VRK3Q8IV63 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
VRK3Q8IV63 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
VRK3Q8IV63 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
VRK3Q8IV63 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
VRK3Q8IV63 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.89■■□□□ 1.9
VRK3Q8IV63 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
VRK3Q8IV63 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
VRK3Q8IV63 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
VRK3Q8IV63 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
VRK3Q8IV63 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
VRK3Q8IV63 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
VRK3Q8IV63 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
VRK3Q8IV63 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
VRK3Q8IV63 AL133380.1-201ENST00000506013 324 ntBASIC26.83■■□□□ 1.89
VRK3Q8IV63 SETD8P1-201ENST00000623146 1180 ntBASIC26.83■■□□□ 1.89
VRK3Q8IV63 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
VRK3Q8IV63 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
VRK3Q8IV63 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
VRK3Q8IV63 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
VRK3Q8IV63 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
VRK3Q8IV63 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
VRK3Q8IV63 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.78■■□□□ 1.88
VRK3Q8IV63 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
VRK3Q8IV63 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
VRK3Q8IV63 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
VRK3Q8IV63 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VRK3Q8IV63 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
VRK3Q8IV63 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.74■■□□□ 1.87
VRK3Q8IV63 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
VRK3Q8IV63 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.73■■□□□ 1.87
VRK3Q8IV63 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
VRK3Q8IV63 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
VRK3Q8IV63 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.7■■□□□ 1.86
VRK3Q8IV63 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
VRK3Q8IV63 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
VRK3Q8IV63 AC136428.2-201ENST00000563187 214 ntBASIC26.69■■□□□ 1.86
VRK3Q8IV63 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.68■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms