Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
LRRC53A6NM62 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
LRRC53A6NM62 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
LRRC53A6NM62 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
LRRC53A6NM62 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
LRRC53A6NM62 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
LRRC53A6NM62 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
LRRC53A6NM62 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.05■■■□□ 2.56
LRRC53A6NM62 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
LRRC53A6NM62 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.02■■■□□ 2.56
LRRC53A6NM62 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31■■■□□ 2.55
LRRC53A6NM62 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
LRRC53A6NM62 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
LRRC53A6NM62 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.93■■■□□ 2.54
LRRC53A6NM62 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
LRRC53A6NM62 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
LRRC53A6NM62 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
LRRC53A6NM62 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
LRRC53A6NM62 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.88■■■□□ 2.53
LRRC53A6NM62 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
LRRC53A6NM62 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
LRRC53A6NM62 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.86■■■□□ 2.53
LRRC53A6NM62 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
LRRC53A6NM62 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
LRRC53A6NM62 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
LRRC53A6NM62 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.79■■■□□ 2.52
LRRC53A6NM62 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
LRRC53A6NM62 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
LRRC53A6NM62 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.77■■■□□ 2.52
LRRC53A6NM62 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
LRRC53A6NM62 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
LRRC53A6NM62 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
LRRC53A6NM62 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.71■■■□□ 2.51
LRRC53A6NM62 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
LRRC53A6NM62 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
LRRC53A6NM62 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
LRRC53A6NM62 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
LRRC53A6NM62 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
LRRC53A6NM62 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
LRRC53A6NM62 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
LRRC53A6NM62 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
LRRC53A6NM62 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.6■■■□□ 2.49
LRRC53A6NM62 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
LRRC53A6NM62 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.58■■■□□ 2.49
LRRC53A6NM62 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.58■■■□□ 2.49
LRRC53A6NM62 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.57■■■□□ 2.48
LRRC53A6NM62 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
LRRC53A6NM62 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
LRRC53A6NM62 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
LRRC53A6NM62 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
LRRC53A6NM62 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
LRRC53A6NM62 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
LRRC53A6NM62 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
LRRC53A6NM62 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
LRRC53A6NM62 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
LRRC53A6NM62 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.5■■■□□ 2.47
LRRC53A6NM62 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
LRRC53A6NM62 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
LRRC53A6NM62 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
LRRC53A6NM62 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.46■■■□□ 2.47
LRRC53A6NM62 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.46■■■□□ 2.47
LRRC53A6NM62 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.45■■■□□ 2.47
LRRC53A6NM62 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
LRRC53A6NM62 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
LRRC53A6NM62 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
LRRC53A6NM62 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
LRRC53A6NM62 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
LRRC53A6NM62 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.39■■■□□ 2.45
LRRC53A6NM62 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
LRRC53A6NM62 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
LRRC53A6NM62 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.34■■■□□ 2.45
LRRC53A6NM62 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
LRRC53A6NM62 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.32■■■□□ 2.44
LRRC53A6NM62 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
LRRC53A6NM62 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
LRRC53A6NM62 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
LRRC53A6NM62 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
LRRC53A6NM62 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
LRRC53A6NM62 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.25■■■□□ 2.43
LRRC53A6NM62 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.25■■■□□ 2.43
LRRC53A6NM62 AC006077.2-201ENST00000623591 457 ntBASIC30.24■■■□□ 2.43
LRRC53A6NM62 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
LRRC53A6NM62 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.24■■■□□ 2.43
LRRC53A6NM62 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
LRRC53A6NM62 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.22■■■□□ 2.43
LRRC53A6NM62 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
LRRC53A6NM62 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.2■■■□□ 2.42
LRRC53A6NM62 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
LRRC53A6NM62 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
LRRC53A6NM62 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
LRRC53A6NM62 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
LRRC53A6NM62 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
LRRC53A6NM62 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.12■■■□□ 2.41
LRRC53A6NM62 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
LRRC53A6NM62 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
LRRC53A6NM62 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
LRRC53A6NM62 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.07■■■□□ 2.41
LRRC53A6NM62 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
LRRC53A6NM62 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.07■■■□□ 2.4
LRRC53A6NM62 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms