Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC36.99■■■■□ 3.51
MSH6P52701 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
MSH6P52701 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC36.98■■■■□ 3.51
MSH6P52701 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
MSH6P52701 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC36.97■■■■□ 3.51
MSH6P52701 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC36.96■■■■□ 3.51
MSH6P52701 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC36.95■■■■□ 3.51
MSH6P52701 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
MSH6P52701 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
MSH6P52701 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
MSH6P52701 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC36.93■■■■□ 3.5
MSH6P52701 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC36.93■■■■□ 3.5
MSH6P52701 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC36.93■■■■□ 3.5
MSH6P52701 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
MSH6P52701 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC36.91■■■■□ 3.5
MSH6P52701 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
MSH6P52701 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC36.91■■■■□ 3.5
MSH6P52701 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
MSH6P52701 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
MSH6P52701 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
MSH6P52701 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC36.88■■■■□ 3.49
MSH6P52701 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC36.88■■■■□ 3.49
MSH6P52701 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC36.87■■■■□ 3.49
MSH6P52701 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
MSH6P52701 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
MSH6P52701 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
MSH6P52701 LINC00273-201ENST00000539813 1452 ntBASIC36.85■■■■□ 3.49
MSH6P52701 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC36.84■■■■□ 3.49
MSH6P52701 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.49
MSH6P52701 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC36.82■■■■□ 3.49
MSH6P52701 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC36.82■■■■□ 3.49
MSH6P52701 U85056.1-201ENST00000616429 682 ntBASIC36.81■■■■□ 3.48
MSH6P52701 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC36.8■■■■□ 3.48
MSH6P52701 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC36.8■■■■□ 3.48
MSH6P52701 GFER-205ENST00000569451 517 ntTSL 5 BASIC36.79■■■■□ 3.48
MSH6P52701 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC36.79■■■■□ 3.48
MSH6P52701 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC36.78■■■■□ 3.48
MSH6P52701 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC36.78■■■■□ 3.48
MSH6P52701 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC36.78■■■■□ 3.48
MSH6P52701 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC36.76■■■■□ 3.48
MSH6P52701 HYI-213ENST00000583037 1322 ntTSL 5 BASIC36.75■■■■□ 3.47
MSH6P52701 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
MSH6P52701 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC36.72■■■■□ 3.47
MSH6P52701 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC36.71■■■■□ 3.47
MSH6P52701 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC36.71■■■■□ 3.47
MSH6P52701 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
MSH6P52701 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC36.69■■■■□ 3.46
MSH6P52701 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
MSH6P52701 TSPY13P-201ENST00000338964 914 ntBASIC36.69■■■■□ 3.46
MSH6P52701 RARRES2P1-201ENST00000474487 481 ntBASIC36.69■■■■□ 3.46
MSH6P52701 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC36.69■■■■□ 3.46
MSH6P52701 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC36.69■■■■□ 3.46
MSH6P52701 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC36.68■■■■□ 3.46
MSH6P52701 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC36.68■■■■□ 3.46
MSH6P52701 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC36.66■■■■□ 3.46
MSH6P52701 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC36.66■■■■□ 3.46
MSH6P52701 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC36.66■■■■□ 3.46
MSH6P52701 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC36.65■■■■□ 3.46
MSH6P52701 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC36.65■■■■□ 3.46
MSH6P52701 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC36.63■■■■□ 3.45
MSH6P52701 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC36.62■■■■□ 3.45
MSH6P52701 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC36.62■■■■□ 3.45
MSH6P52701 AC004987.1-201ENST00000428627 508 ntBASIC36.61■■■■□ 3.45
MSH6P52701 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
MSH6P52701 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC36.59■■■■□ 3.45
MSH6P52701 KRT18P60-201ENST00000312876 1297 ntBASIC36.59■■■■□ 3.45
MSH6P52701 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC36.59■■■■□ 3.45
MSH6P52701 ATP5G2P3-201ENST00000429083 425 ntBASIC36.58■■■■□ 3.45
MSH6P52701 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC36.58■■■■□ 3.45
MSH6P52701 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC36.58■■■■□ 3.45
MSH6P52701 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC36.57■■■■□ 3.45
MSH6P52701 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC36.57■■■■□ 3.45
MSH6P52701 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC36.57■■■■□ 3.45
MSH6P52701 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC36.57■■■■□ 3.44
MSH6P52701 AC060814.1-201ENST00000554326 538 ntBASIC36.56■■■■□ 3.44
MSH6P52701 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC36.56■■■■□ 3.44
MSH6P52701 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC36.56■■■■□ 3.44
MSH6P52701 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC36.55■■■■□ 3.44
MSH6P52701 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
MSH6P52701 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
MSH6P52701 GUK1-208ENST00000366728 842 ntTSL 2 BASIC36.54■■■■□ 3.44
MSH6P52701 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
MSH6P52701 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC36.52■■■■□ 3.44
MSH6P52701 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC36.51■■■■□ 3.43
MSH6P52701 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
MSH6P52701 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
MSH6P52701 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC36.5■■■■□ 3.43
MSH6P52701 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC36.49■■■■□ 3.43
MSH6P52701 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
MSH6P52701 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC36.49■■■■□ 3.43
MSH6P52701 CHST11-203ENST00000547956 936 ntTSL 2 BASIC36.48■■■■□ 3.43
MSH6P52701 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC36.47■■■■□ 3.43
MSH6P52701 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC36.46■■■■□ 3.43
MSH6P52701 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
MSH6P52701 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC36.45■■■■□ 3.43
MSH6P52701 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC36.44■■■■□ 3.42
MSH6P52701 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
MSH6P52701 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC36.41■■■■□ 3.42
MSH6P52701 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
MSH6P52701 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC36.41■■■■□ 3.42
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms