RNA–Protein interactions for RNA: ENST00000612672.1

MMP28-203, Transcript of matrix metallopeptidase 28, humanhuman

TSL 1 (best) BASIC

Gene MMP28, Length 1,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-203ENST00000612672 NISCHQ9Y2I1 1504 aa59.87■■■■■ 7.17
MMP28-203ENST00000612672 ABCC9O60706 1549 aa54.34■■■■■ 6.29
MMP28-203ENST00000612672 CCDC180Q9P1Z9 1646 aa53.93■■■■■ 6.22
MMP28-203ENST00000612672 RB1CC1Q8TDY2 1594 aa51.46■■■■■ 5.83
MMP28-203ENST00000612672 DNAJC5BQ9UF47 199 aa51.4■■■■■ 5.82
MMP28-203ENST00000612672 NACADO15069 1562 aa51■■■■■ 5.75
MMP28-203ENST00000612672 UNC13AQ9UPW8 1703 aa50.56■■■■■ 5.68
MMP28-203ENST00000612672 DCAF8L2P0C7V8 631 aa50.52■■■■■ 5.68
MMP28-203ENST00000612672 PABPN1Q86U42 306 aaKnown RBP eCLIP50.47■■■■■ 5.67
MMP28-203ENST00000612672 BICRAQ9NZM4 1560 aa50.17■■■■■ 5.62
MMP28-203ENST00000612672 MYO15BQ96JP2 1530 aa50.14■■■■■ 5.62
MMP28-203ENST00000612672 ZCCHC6Q5VYS8 1495 aaKnown RBP49.57■■■■■ 5.53
MMP28-203ENST00000612672 DCAF1Q9Y4B6 1507 aa49.38■■■■■ 5.5
MMP28-203ENST00000612672 SHROOM4Q9ULL8 1493 aa49.2■■■■■ 5.47
MMP28-203ENST00000612672 SCRIBQ14160 1630 aa49.17■■■■■ 5.46
MMP28-203ENST00000612672 CC2D2AQ9P2K1 1620 aa49.09■■■■■ 5.45
MMP28-203ENST00000612672 CECR2Q9BXF3 1484 aa48.94■■■■■ 5.43
MMP28-203ENST00000612672 EIF4G1Q04637 1599 aaKnown RBP48.87■■■■■ 5.41
MMP28-203ENST00000612672 DNAJC5Q9H3Z4 198 aa47.33■■■■■ 5.17
MMP28-203ENST00000612672 NCAPD3P42695 1498 aa47.08■■■■■ 5.13
MMP28-203ENST00000612672 ATAD2BQ9ULI0 1458 aa46.94■■■■■ 5.1
MMP28-203ENST00000612672 CUX2O14529 1486 aa46.91■■■■■ 5.1
MMP28-203ENST00000612672 SMARCA4P51532 1647 aa46.85■■■■■ 5.09
MMP28-203ENST00000612672 ERCC6Q03468 1493 aa46.82■■■■■ 5.09
MMP28-203ENST00000612672 HMGXB3Q12766 1538 aa46.75■■■■■ 5.07
MMP28-203ENST00000612672 SMARCA2P51531 1590 aa46.72■■■■■ 5.07
MMP28-203ENST00000612672 NESP48681 1621 aa46.63■■■■■ 5.06
MMP28-203ENST00000612672 BAZ1AQ9NRL2 1556 aaPredicted RBP46.45■■■■■ 5.03
MMP28-203ENST00000612672 BAZ1BQ9UIG0 1483 aaKnown RBP46.42■■■■■ 5.02
MMP28-203ENST00000612672 PEG3Q9GZU2 1588 aa46.37■■■■■ 5.01
MMP28-203ENST00000612672 THOC2Q8NI27 1593 aaKnown RBP46.27■■■■■ 5
MMP28-203ENST00000612672 MROH2BQ7Z745 1585 aa46.19■■■■■ 4.99
MMP28-203ENST00000612672 LAMC3Q9Y6N6 1575 aa46.11■■■■■ 4.97
MMP28-203ENST00000612672 KIF21AQ7Z4S6 1674 aa46.07■■■■■ 4.97
MMP28-203ENST00000612672 PDS5BQ9NTI5 1447 aa45.76■■■■■ 4.92
MMP28-203ENST00000612672 WIZO95785 1651 aa45.66■■■■■ 4.9
MMP28-203ENST00000612672 CADPSQ9ULU8 1353 aa45.6■■■■■ 4.89
MMP28-203ENST00000612672 MRC2Q9UBG0 1479 aa45.49■■■■■ 4.87
MMP28-203ENST00000612672 WDR62O43379 1518 aa45.46■■■■■ 4.87
MMP28-203ENST00000612672 CEP164Q9UPV0 1460 aa45.21■■■■■ 4.83
MMP28-203ENST00000612672 FANCD2Q9BXW9 1451 aa45.15■■■■■ 4.82
MMP28-203ENST00000612672 TRIM41Q8WV44 630 aa45.09■■■■■ 4.81
MMP28-203ENST00000612672 CFTRP13569 1480 aa45.05■■■■■ 4.8
MMP28-203ENST00000612672 RSF1Q96T23 1441 aaPredicted RBP45.01■■■■■ 4.8
MMP28-203ENST00000612672 TOP2AP11388 1531 aaKnown RBP44.96■■■■■ 4.79
MMP28-203ENST00000612672 URB2Q14146 1524 aaKnown RBP44.9■■■■■ 4.78
MMP28-203ENST00000612672 PRDM2Q13029 1718 aa44.7■■■■■ 4.75
MMP28-203ENST00000612672 OSCARQ8IYS5 282 aa44.57■■■■■ 4.73
MMP28-203ENST00000612672 CCDC88BA6NC98 1476 aa44.46■■■■■ 4.71
MMP28-203ENST00000612672 ZNF608Q9ULD9 1512 aaPredicted RBP44.42■■■■■ 4.7
MMP28-203ENST00000612672 RIMBP3CA6NJZ7 1639 aa44.31■■■■■ 4.68
MMP28-203ENST00000612672 RIMBP3BA6NNM3 1639 aa44.31■■■■■ 4.68
MMP28-203ENST00000612672 RIMBP3Q9UFD9 1639 aa44.31■■■■■ 4.68
MMP28-203ENST00000612672 IFT140Q96RY7 1462 aa44.3■■■■■ 4.68
MMP28-203ENST00000612672 TOPBP1Q92547 1522 aa44.29■■■■■ 4.68
MMP28-203ENST00000612672 EIF4G3O43432 1585 aaKnown RBP44.16■■■■■ 4.66
MMP28-203ENST00000612672 DNMBPQ6XZF7 1577 aa44.08■■■■■ 4.65
MMP28-203ENST00000612672 ARHGEF11O15085 1522 aa44.07■■■■■ 4.65
MMP28-203ENST00000612672 TARBP1Q13395 1621 aaKnown RBP43.99■■■■■ 4.63
MMP28-203ENST00000612672 ABCC8Q09428 1581 aa43.98■■■■■ 4.63
MMP28-203ENST00000612672 CHD1O14646 1710 aa43.95■■■■■ 4.63
MMP28-203ENST00000612672 AQRO60306 1485 aaKnown RBP eCLIP43.89■■■■■ 4.62
MMP28-203ENST00000612672 POLA1P09884 1462 aaPredicted RBP43.82■■■■■ 4.6
MMP28-203ENST00000612672 RAD54L2Q9Y4B4 1467 aa43.69■■■■■ 4.58
MMP28-203ENST00000612672 ARAP1Q96P48 1450 aa43.65■■■■■ 4.58
MMP28-203ENST00000612672 CYB5RLQ6IPT4 315 aa43.63■■■■■ 4.57
MMP28-203ENST00000612672 FBLN2P98095 1184 aa43.53■■■■■ 4.56
MMP28-203ENST00000612672 TDRD9Q8NDG6 1382 aaKnown RBP43.53■■■■■ 4.56
MMP28-203ENST00000612672 SOGA1O94964 1423 aa43.5■■■■■ 4.55
MMP28-203ENST00000612672 FGD5Q6ZNL6 1462 aa43.48■■■■■ 4.55
MMP28-203ENST00000612672 SNAPC4Q5SXM2 1469 aa43.45■■■■■ 4.55
MMP28-203ENST00000612672 CUX1P39880 1505 aa43.43■■■■■ 4.54
MMP28-203ENST00000612672 CLASP1Q7Z460 1538 aa43.39■■■■■ 4.54
MMP28-203ENST00000612672 WDR97A6NE52 1622 aa43.37■■■■■ 4.53
MMP28-203ENST00000612672 MAGI1Q96QZ7 1491 aaPredicted RBP43.23■■■■■ 4.51
MMP28-203ENST00000612672 TRHP20396 242 aaPredicted RBP43.22■■■■■ 4.51
MMP28-203ENST00000612672 SYNJ1O43426 1573 aa43.2■■■■■ 4.51
MMP28-203ENST00000612672 GRIN2BQ13224 1484 aa43.19■■■■■ 4.5
MMP28-203ENST00000612672 PBRM1Q86U86 1689 aa43.16■■■■■ 4.5
MMP28-203ENST00000612672 CHMP7Q8WUX9 453 aaPredicted RBP43.11■■■■■ 4.49
MMP28-203ENST00000612672 SYNJ2O15056 1496 aa43.11■■■■■ 4.49
MMP28-203ENST00000612672 ABCA5Q8WWZ7 1642 aa43■■■■■ 4.47
MMP28-203ENST00000612672 GAPVD1Q14C86 1478 aa43■■■■■ 4.47
MMP28-203ENST00000612672 ABCA10Q8WWZ4 1543 aa42.92■■■■■ 4.46
MMP28-203ENST00000612672 ERCC6L2Q5T890 1561 aa42.78■■■■■ 4.44
MMP28-203ENST00000612672 ADAMTS12P58397 1594 aa42.69■■■■■ 4.43
MMP28-203ENST00000612672 GRIN2AQ12879 1464 aa42.68■■■■■ 4.42
MMP28-203ENST00000612672 CEP170Q5SW79 1584 aa42.65■■■■■ 4.42
MMP28-203ENST00000612672 BIVM-ERCC5R4GMW8 1640 aa42.62■■■■■ 4.41
MMP28-203ENST00000612672 SUPT5HO00267 1087 aaKnown RBP42.6■■■■■ 4.41
MMP28-203ENST00000612672 NUP160Q12769 1436 aa42.57■■■■■ 4.41
MMP28-203ENST00000612672 WRNQ14191 1432 aaPredicted RBP eCLIP42.57■■■■■ 4.41
MMP28-203ENST00000612672 TOP2BQ02880 1626 aa42.57■■■■■ 4.4
MMP28-203ENST00000612672 SHROOM2Q13796 1616 aa42.5■■■■■ 4.39
MMP28-203ENST00000612672 FHAD1B1AJZ9 1412 aa42.4■■■■■ 4.38
MMP28-203ENST00000612672 ERICH3Q5RHP9 1530 aa42.36■■■■■ 4.37
MMP28-203ENST00000612672 KIF13AQ9H1H9 1805 aa42.23■■■■■ 4.35
MMP28-203ENST00000612672 AEBP2Q6ZN18 517 aaPredicted RBP42.19■■■■■ 4.34
MMP28-203ENST00000612672 PRG4Q92954 1404 aaPredicted RBP42.14■■■■■ 4.34
MMP28-203ENST00000612672 RUSC2Q8N2Y8 1516 aa42.12■■■■■ 4.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms