RNA–Protein interactions for RNA: ENST00000331479.3

SMDT1-201, Transcript of single-pass membrane protein with aspartate rich tail 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMDT1, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMDT1-201ENST00000331479 NISCHQ9Y2I1 1504 aa62.12■■■■■ 7.54
SMDT1-201ENST00000331479 CCDC180Q9P1Z9 1646 aa54.92■■■■■ 6.38
SMDT1-201ENST00000331479 ABCC9O60706 1549 aa53.32■■■■■ 6.13
SMDT1-201ENST00000331479 ZCCHC6Q5VYS8 1495 aaKnown RBP51.87■■■■■ 5.89
SMDT1-201ENST00000331479 DCAF8L2P0C7V8 631 aa51.74■■■■■ 5.87
SMDT1-201ENST00000331479 NACADO15069 1562 aa51.52■■■■■ 5.84
SMDT1-201ENST00000331479 RB1CC1Q8TDY2 1594 aa51.44■■■■■ 5.83
SMDT1-201ENST00000331479 DCAF1Q9Y4B6 1507 aa51.37■■■■■ 5.81
SMDT1-201ENST00000331479 MYO15BQ96JP2 1530 aa51.36■■■■■ 5.81
SMDT1-201ENST00000331479 UNC13AQ9UPW8 1703 aa50.37■■■■■ 5.65
SMDT1-201ENST00000331479 SCRIBQ14160 1630 aa50.25■■■■■ 5.64
SMDT1-201ENST00000331479 PABPN1Q86U42 306 aaKnown RBP eCLIP49.96■■■■■ 5.59
SMDT1-201ENST00000331479 BICRAQ9NZM4 1560 aa49.95■■■■■ 5.59
SMDT1-201ENST00000331479 SHROOM4Q9ULL8 1493 aa49.5■■■■■ 5.51
SMDT1-201ENST00000331479 EIF4G1Q04637 1599 aaKnown RBP48.56■■■■■ 5.36
SMDT1-201ENST00000331479 DNAJC5BQ9UF47 199 aa48.51■■■■■ 5.36
SMDT1-201ENST00000331479 CECR2Q9BXF3 1484 aa48.4■■■■■ 5.34
SMDT1-201ENST00000331479 CC2D2AQ9P2K1 1620 aa48.23■■■■■ 5.31
SMDT1-201ENST00000331479 SMARCA4P51532 1647 aa48.09■■■■■ 5.29
SMDT1-201ENST00000331479 BAZ1AQ9NRL2 1556 aaPredicted RBP48.08■■■■■ 5.29
SMDT1-201ENST00000331479 MROH2BQ7Z745 1585 aa47.93■■■■■ 5.26
SMDT1-201ENST00000331479 ATAD2BQ9ULI0 1458 aa47.7■■■■■ 5.23
SMDT1-201ENST00000331479 SMARCA2P51531 1590 aa47.62■■■■■ 5.21
SMDT1-201ENST00000331479 PEG3Q9GZU2 1588 aa47.58■■■■■ 5.21
SMDT1-201ENST00000331479 RSF1Q96T23 1441 aaPredicted RBP47.57■■■■■ 5.21
SMDT1-201ENST00000331479 NCAPD3P42695 1498 aa47.56■■■■■ 5.2
SMDT1-201ENST00000331479 WIZO95785 1651 aa47.45■■■■■ 5.19
SMDT1-201ENST00000331479 HMGXB3Q12766 1538 aa47.36■■■■■ 5.17
SMDT1-201ENST00000331479 BAZ1BQ9UIG0 1483 aaKnown RBP47.31■■■■■ 5.16
SMDT1-201ENST00000331479 TOP2AP11388 1531 aaKnown RBP46.92■■■■■ 5.1
SMDT1-201ENST00000331479 SUPT5HO00267 1087 aaKnown RBP46.83■■■■■ 5.09
SMDT1-201ENST00000331479 CCDC88BA6NC98 1476 aa46.41■■■■■ 5.02
SMDT1-201ENST00000331479 NESP48681 1621 aa46.33■■■■■ 5.01
SMDT1-201ENST00000331479 CADPSQ9ULU8 1353 aa46.22■■■■■ 4.99
SMDT1-201ENST00000331479 LAMC3Q9Y6N6 1575 aa46.2■■■■■ 4.99
SMDT1-201ENST00000331479 CFTRP13569 1480 aa46.06■■■■■ 4.96
SMDT1-201ENST00000331479 PDS5BQ9NTI5 1447 aa45.87■■■■■ 4.93
SMDT1-201ENST00000331479 ERCC6Q03468 1493 aa45.86■■■■■ 4.93
SMDT1-201ENST00000331479 KIF21AQ7Z4S6 1674 aa45.77■■■■■ 4.92
SMDT1-201ENST00000331479 PRDM2Q13029 1718 aa45.72■■■■■ 4.91
SMDT1-201ENST00000331479 FANCD2Q9BXW9 1451 aa45.69■■■■■ 4.91
SMDT1-201ENST00000331479 CEP164Q9UPV0 1460 aa45.56■■■■■ 4.88
SMDT1-201ENST00000331479 THOC2Q8NI27 1593 aaKnown RBP45.45■■■■■ 4.87
SMDT1-201ENST00000331479 MRC2Q9UBG0 1479 aa45.38■■■■■ 4.86
SMDT1-201ENST00000331479 URB2Q14146 1524 aaKnown RBP45.23■■■■■ 4.83
SMDT1-201ENST00000331479 WDR62O43379 1518 aa45.22■■■■■ 4.83
SMDT1-201ENST00000331479 CUX2O14529 1486 aa45.13■■■■■ 4.82
SMDT1-201ENST00000331479 TOPBP1Q92547 1522 aa45.03■■■■■ 4.8
SMDT1-201ENST00000331479 DNMBPQ6XZF7 1577 aa45■■■■■ 4.79
SMDT1-201ENST00000331479 ABCC8Q09428 1581 aa44.98■■■■■ 4.79
SMDT1-201ENST00000331479 CUX1P39880 1505 aa44.93■■■■■ 4.78
SMDT1-201ENST00000331479 WRNQ14191 1432 aaPredicted RBP eCLIP44.81■■■■■ 4.76
SMDT1-201ENST00000331479 SYNJ1O43426 1573 aa44.71■■■■■ 4.75
SMDT1-201ENST00000331479 POLA1P09884 1462 aaPredicted RBP44.69■■■■■ 4.75
SMDT1-201ENST00000331479 FGD5Q6ZNL6 1462 aa44.67■■■■■ 4.74
SMDT1-201ENST00000331479 TOP2BQ02880 1626 aa44.65■■■■■ 4.74
SMDT1-201ENST00000331479 BIVM-ERCC5R4GMW8 1640 aa44.63■■■■■ 4.74
SMDT1-201ENST00000331479 IFT140Q96RY7 1462 aa44.57■■■■■ 4.73
SMDT1-201ENST00000331479 RAD54L2Q9Y4B4 1467 aa44.53■■■■■ 4.72
SMDT1-201ENST00000331479 SOGA1O94964 1423 aa44.52■■■■■ 4.72
SMDT1-201ENST00000331479 TARBP1Q13395 1621 aaKnown RBP44.51■■■■■ 4.72
SMDT1-201ENST00000331479 ZNF608Q9ULD9 1512 aaPredicted RBP44.41■■■■■ 4.7
SMDT1-201ENST00000331479 WDR97A6NE52 1622 aa44.26■■■■■ 4.68
SMDT1-201ENST00000331479 ABCA10Q8WWZ4 1543 aa44.24■■■■■ 4.67
SMDT1-201ENST00000331479 TDRD9Q8NDG6 1382 aaKnown RBP44.23■■■■■ 4.67
SMDT1-201ENST00000331479 AQRO60306 1485 aaKnown RBP eCLIP44.22■■■■■ 4.67
SMDT1-201ENST00000331479 EIF4G3O43432 1585 aaKnown RBP44.22■■■■■ 4.67
SMDT1-201ENST00000331479 TRIM41Q8WV44 630 aa44.15■■■■■ 4.66
SMDT1-201ENST00000331479 ABCA5Q8WWZ7 1642 aa44.02■■■■■ 4.64
SMDT1-201ENST00000331479 CHIC1Q5VXU3 224 aa44.01■■■■■ 4.64
SMDT1-201ENST00000331479 GAPVD1Q14C86 1478 aa44■■■■■ 4.63
SMDT1-201ENST00000331479 GRIN2BQ13224 1484 aa43.9■■■■■ 4.62
SMDT1-201ENST00000331479 PBRM1Q86U86 1689 aa43.87■■■■■ 4.61
SMDT1-201ENST00000331479 KIF27Q86VH2 1401 aa43.81■■■■■ 4.6
SMDT1-201ENST00000331479 SNAPC4Q5SXM2 1469 aa43.8■■■■■ 4.6
SMDT1-201ENST00000331479 MAGI1Q96QZ7 1491 aaPredicted RBP43.71■■■■■ 4.59
SMDT1-201ENST00000331479 ERICH3Q5RHP9 1530 aa43.7■■■■■ 4.59
SMDT1-201ENST00000331479 RUSC2Q8N2Y8 1516 aa43.7■■■■■ 4.59
SMDT1-201ENST00000331479 IGF1RP08069 1367 aa43.61■■■■■ 4.57
SMDT1-201ENST00000331479 FBLN2P98095 1184 aa43.58■■■■■ 4.57
SMDT1-201ENST00000331479 CHD1O14646 1710 aa43.56■■■■■ 4.56
SMDT1-201ENST00000331479 ADAMTS12P58397 1594 aa43.55■■■■■ 4.56
SMDT1-201ENST00000331479 SYNJ2O15056 1496 aa43.55■■■■■ 4.56
SMDT1-201ENST00000331479 CHMP7Q8WUX9 453 aaPredicted RBP43.51■■■■■ 4.56
SMDT1-201ENST00000331479 FHAD1B1AJZ9 1412 aa43.49■■■■■ 4.55
SMDT1-201ENST00000331479 OSCARQ8IYS5 282 aa43.41■■■■■ 4.54
SMDT1-201ENST00000331479 CUL7Q14999 1698 aa43.4■■■■■ 4.54
SMDT1-201ENST00000331479 GRIN2AQ12879 1464 aa43.36■■■■■ 4.53
SMDT1-201ENST00000331479 CARMIL1Q5VZK9 1371 aa43.35■■■■■ 4.53
SMDT1-201ENST00000331479 FAM9AQ8IZU1 332 aaPredicted RBP43.29■■■■■ 4.52
SMDT1-201ENST00000331479 EEA1Q15075 1411 aa43.29■■■■■ 4.52
SMDT1-201ENST00000331479 CSRNP3Q8WYN3 585 aa43.24■■■■■ 4.51
SMDT1-201ENST00000331479 DNAJC5Q9H3Z4 198 aa43.17■■■■■ 4.5
SMDT1-201ENST00000331479 CEP170Q5SW79 1584 aa43.15■■■■■ 4.5
SMDT1-201ENST00000331479 PRXQ9BXM0 1461 aa43.14■■■■■ 4.5
SMDT1-201ENST00000331479 NUP160Q12769 1436 aa43.14■■■■■ 4.5
SMDT1-201ENST00000331479 RAPGEF2Q9Y4G8 1499 aa43.13■■■■■ 4.5
SMDT1-201ENST00000331479 CLASP1Q7Z460 1538 aa43.09■■■■■ 4.49
SMDT1-201ENST00000331479 KIAA0586Q9BVV6 1533 aa42.85■■■■■ 4.45
SMDT1-201ENST00000331479 KIF21BO75037 1637 aa42.85■■■■■ 4.45
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms