RNA–Protein interactions for RNA: ENST00000379236.3

TNFRSF4-201, Transcript of TNF receptor superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF4, Length 1,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-201ENST00000379236 NISCHQ9Y2I1 1504 aa60.72■■■■■ 7.31
TNFRSF4-201ENST00000379236 CCDC180Q9P1Z9 1646 aa54.38■■■■■ 6.3
TNFRSF4-201ENST00000379236 ABCC9O60706 1549 aa53.69■■■■■ 6.19
TNFRSF4-201ENST00000379236 RB1CC1Q8TDY2 1594 aa51.45■■■■■ 5.83
TNFRSF4-201ENST00000379236 NACADO15069 1562 aa51.19■■■■■ 5.79
TNFRSF4-201ENST00000379236 DCAF8L2P0C7V8 631 aa51.07■■■■■ 5.77
TNFRSF4-201ENST00000379236 MYO15BQ96JP2 1530 aa50.62■■■■■ 5.69
TNFRSF4-201ENST00000379236 ZCCHC6Q5VYS8 1495 aaKnown RBP50.45■■■■■ 5.67
TNFRSF4-201ENST00000379236 UNC13AQ9UPW8 1703 aa50.36■■■■■ 5.65
TNFRSF4-201ENST00000379236 DCAF1Q9Y4B6 1507 aa50.19■■■■■ 5.62
TNFRSF4-201ENST00000379236 PABPN1Q86U42 306 aaKnown RBP eCLIP50.02■■■■■ 5.6
TNFRSF4-201ENST00000379236 BICRAQ9NZM4 1560 aa49.79■■■■■ 5.56
TNFRSF4-201ENST00000379236 DNAJC5BQ9UF47 199 aa49.63■■■■■ 5.54
TNFRSF4-201ENST00000379236 SCRIBQ14160 1630 aa49.56■■■■■ 5.52
TNFRSF4-201ENST00000379236 SHROOM4Q9ULL8 1493 aa49.27■■■■■ 5.48
TNFRSF4-201ENST00000379236 EIF4G1Q04637 1599 aaKnown RBP48.6■■■■■ 5.37
TNFRSF4-201ENST00000379236 CC2D2AQ9P2K1 1620 aa48.58■■■■■ 5.37
TNFRSF4-201ENST00000379236 CECR2Q9BXF3 1484 aa48.3■■■■■ 5.32
TNFRSF4-201ENST00000379236 SMARCA4P51532 1647 aa47.31■■■■■ 5.16
TNFRSF4-201ENST00000379236 BAZ1AQ9NRL2 1556 aaPredicted RBP47.17■■■■■ 5.14
TNFRSF4-201ENST00000379236 NCAPD3P42695 1498 aa47.14■■■■■ 5.14
TNFRSF4-201ENST00000379236 SMARCA2P51531 1590 aa47.12■■■■■ 5.13
TNFRSF4-201ENST00000379236 ATAD2BQ9ULI0 1458 aa47.11■■■■■ 5.13
TNFRSF4-201ENST00000379236 HMGXB3Q12766 1538 aa46.95■■■■■ 5.11
TNFRSF4-201ENST00000379236 PEG3Q9GZU2 1588 aa46.79■■■■■ 5.08
TNFRSF4-201ENST00000379236 BAZ1BQ9UIG0 1483 aaKnown RBP46.79■■■■■ 5.08
TNFRSF4-201ENST00000379236 MROH2BQ7Z745 1585 aa46.77■■■■■ 5.08
TNFRSF4-201ENST00000379236 ERCC6Q03468 1493 aa46.41■■■■■ 5.02
TNFRSF4-201ENST00000379236 WIZO95785 1651 aa46.33■■■■■ 5.01
TNFRSF4-201ENST00000379236 NESP48681 1621 aa46.25■■■■■ 4.99
TNFRSF4-201ENST00000379236 LAMC3Q9Y6N6 1575 aa46.13■■■■■ 4.98
TNFRSF4-201ENST00000379236 CUX2O14529 1486 aa46.06■■■■■ 4.96
TNFRSF4-201ENST00000379236 RSF1Q96T23 1441 aaPredicted RBP45.98■■■■■ 4.95
TNFRSF4-201ENST00000379236 KIF21AQ7Z4S6 1674 aa45.84■■■■■ 4.93
TNFRSF4-201ENST00000379236 PDS5BQ9NTI5 1447 aa45.8■■■■■ 4.92
TNFRSF4-201ENST00000379236 TOP2AP11388 1531 aaKnown RBP45.77■■■■■ 4.92
TNFRSF4-201ENST00000379236 CADPSQ9ULU8 1353 aa45.77■■■■■ 4.92
TNFRSF4-201ENST00000379236 THOC2Q8NI27 1593 aaKnown RBP45.74■■■■■ 4.91
TNFRSF4-201ENST00000379236 MRC2Q9UBG0 1479 aa45.37■■■■■ 4.85
TNFRSF4-201ENST00000379236 CFTRP13569 1480 aa45.36■■■■■ 4.85
TNFRSF4-201ENST00000379236 CEP164Q9UPV0 1460 aa45.35■■■■■ 4.85
TNFRSF4-201ENST00000379236 FANCD2Q9BXW9 1451 aa45.3■■■■■ 4.84
TNFRSF4-201ENST00000379236 PRDM2Q13029 1718 aa45.24■■■■■ 4.83
TNFRSF4-201ENST00000379236 WDR62O43379 1518 aa45.23■■■■■ 4.83
TNFRSF4-201ENST00000379236 DNAJC5Q9H3Z4 198 aa45.23■■■■■ 4.83
TNFRSF4-201ENST00000379236 CCDC88BA6NC98 1476 aa45.18■■■■■ 4.82
TNFRSF4-201ENST00000379236 URB2Q14146 1524 aaKnown RBP44.85■■■■■ 4.77
TNFRSF4-201ENST00000379236 ABCC8Q09428 1581 aa44.51■■■■■ 4.72
TNFRSF4-201ENST00000379236 TOPBP1Q92547 1522 aa44.5■■■■■ 4.71
TNFRSF4-201ENST00000379236 SUPT5HO00267 1087 aaKnown RBP44.49■■■■■ 4.71
TNFRSF4-201ENST00000379236 DNMBPQ6XZF7 1577 aa44.45■■■■■ 4.71
TNFRSF4-201ENST00000379236 IFT140Q96RY7 1462 aa44.39■■■■■ 4.7
TNFRSF4-201ENST00000379236 ZNF608Q9ULD9 1512 aaPredicted RBP44.19■■■■■ 4.66
TNFRSF4-201ENST00000379236 EIF4G3O43432 1585 aaKnown RBP44.1■■■■■ 4.65
TNFRSF4-201ENST00000379236 POLA1P09884 1462 aaPredicted RBP44.08■■■■■ 4.65
TNFRSF4-201ENST00000379236 TARBP1Q13395 1621 aaKnown RBP44.07■■■■■ 4.65
TNFRSF4-201ENST00000379236 OSCARQ8IYS5 282 aa44.01■■■■■ 4.64
TNFRSF4-201ENST00000379236 CUX1P39880 1505 aa43.94■■■■■ 4.62
TNFRSF4-201ENST00000379236 FGD5Q6ZNL6 1462 aa43.91■■■■■ 4.62
TNFRSF4-201ENST00000379236 SOGA1O94964 1423 aa43.89■■■■■ 4.62
TNFRSF4-201ENST00000379236 RAD54L2Q9Y4B4 1467 aa43.89■■■■■ 4.62
TNFRSF4-201ENST00000379236 AQRO60306 1485 aaKnown RBP eCLIP43.87■■■■■ 4.61
TNFRSF4-201ENST00000379236 WDR97A6NE52 1622 aa43.76■■■■■ 4.6
TNFRSF4-201ENST00000379236 CHD1O14646 1710 aa43.73■■■■■ 4.59
TNFRSF4-201ENST00000379236 TDRD9Q8NDG6 1382 aaKnown RBP43.69■■■■■ 4.59
TNFRSF4-201ENST00000379236 TRIM41Q8WV44 630 aa43.63■■■■■ 4.57
TNFRSF4-201ENST00000379236 FBLN2P98095 1184 aa43.56■■■■■ 4.56
TNFRSF4-201ENST00000379236 SNAPC4Q5SXM2 1469 aa43.51■■■■■ 4.56
TNFRSF4-201ENST00000379236 BIVM-ERCC5R4GMW8 1640 aa43.49■■■■■ 4.55
TNFRSF4-201ENST00000379236 PBRM1Q86U86 1689 aa43.49■■■■■ 4.55
TNFRSF4-201ENST00000379236 GRIN2BQ13224 1484 aa43.47■■■■■ 4.55
TNFRSF4-201ENST00000379236 RIMBP3CA6NJZ7 1639 aa43.46■■■■■ 4.55
TNFRSF4-201ENST00000379236 RIMBP3BA6NNM3 1639 aa43.46■■■■■ 4.55
TNFRSF4-201ENST00000379236 RIMBP3Q9UFD9 1639 aa43.46■■■■■ 4.55
TNFRSF4-201ENST00000379236 TOP2BQ02880 1626 aa43.45■■■■■ 4.55
TNFRSF4-201ENST00000379236 WRNQ14191 1432 aaPredicted RBP eCLIP43.45■■■■■ 4.55
TNFRSF4-201ENST00000379236 MAGI1Q96QZ7 1491 aaPredicted RBP43.43■■■■■ 4.54
TNFRSF4-201ENST00000379236 ABCA10Q8WWZ4 1543 aa43.43■■■■■ 4.54
TNFRSF4-201ENST00000379236 SYNJ1O43426 1573 aa43.4■■■■■ 4.54
TNFRSF4-201ENST00000379236 GAPVD1Q14C86 1478 aa43.39■■■■■ 4.54
TNFRSF4-201ENST00000379236 ABCA5Q8WWZ7 1642 aa43.36■■■■■ 4.53
TNFRSF4-201ENST00000379236 ARHGEF11O15085 1522 aa43.32■■■■■ 4.53
TNFRSF4-201ENST00000379236 CHMP7Q8WUX9 453 aaPredicted RBP43.32■■■■■ 4.53
TNFRSF4-201ENST00000379236 SYNJ2O15056 1496 aa43.25■■■■■ 4.51
TNFRSF4-201ENST00000379236 CLASP1Q7Z460 1538 aa43.1■■■■■ 4.49
TNFRSF4-201ENST00000379236 ADAMTS12P58397 1594 aa43■■■■■ 4.47
TNFRSF4-201ENST00000379236 ERICH3Q5RHP9 1530 aa42.94■■■■■ 4.46
TNFRSF4-201ENST00000379236 CYB5RLQ6IPT4 315 aa42.94■■■■■ 4.46
TNFRSF4-201ENST00000379236 ARAP1Q96P48 1450 aa42.91■■■■■ 4.46
TNFRSF4-201ENST00000379236 GRIN2AQ12879 1464 aa42.9■■■■■ 4.46
TNFRSF4-201ENST00000379236 FHAD1B1AJZ9 1412 aa42.86■■■■■ 4.45
TNFRSF4-201ENST00000379236 CEP170Q5SW79 1584 aa42.73■■■■■ 4.43
TNFRSF4-201ENST00000379236 NUP160Q12769 1436 aa42.68■■■■■ 4.42
TNFRSF4-201ENST00000379236 KIF27Q86VH2 1401 aa42.61■■■■■ 4.41
TNFRSF4-201ENST00000379236 CUL7Q14999 1698 aa42.53■■■■■ 4.4
TNFRSF4-201ENST00000379236 SHROOM2Q13796 1616 aa42.5■■■■■ 4.39
TNFRSF4-201ENST00000379236 ERCC6L2Q5T890 1561 aa42.44■■■■■ 4.39
TNFRSF4-201ENST00000379236 IGF1RP08069 1367 aa42.39■■■■■ 4.38
TNFRSF4-201ENST00000379236 RUSC2Q8N2Y8 1516 aa42.39■■■■■ 4.38
TNFRSF4-201ENST00000379236 TRHP20396 242 aaPredicted RBP42.37■■■■■ 4.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms