RNA–Protein interactions for RNA: ENST00000379236.3

TNFRSF4-201, Transcript of TNF receptor superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF4, Length 1,068 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-201ENST00000379236 NISCHQ9Y2I1 1504 aa60.72■■■■■ 7.31
TNFRSF4-201ENST00000379236 CCDC180Q9P1Z9 1646 aa54.38■■■■■ 6.3
TNFRSF4-201ENST00000379236 ABCC9O60706 1549 aa53.69■■■■■ 6.19
TNFRSF4-201ENST00000379236 RB1CC1Q8TDY2 1594 aa51.45■■■■■ 5.83
TNFRSF4-201ENST00000379236 NACADO15069 1562 aa51.19■■■■■ 5.79
TNFRSF4-201ENST00000379236 DCAF8L2P0C7V8 631 aa51.07■■■■■ 5.77
TNFRSF4-201ENST00000379236 MYO15BQ96JP2 1530 aa50.62■■■■■ 5.69
TNFRSF4-201ENST00000379236 ZCCHC6Q5VYS8 1495 aaKnown RBP50.45■■■■■ 5.67
TNFRSF4-201ENST00000379236 UNC13AQ9UPW8 1703 aa50.36■■■■■ 5.65
TNFRSF4-201ENST00000379236 DCAF1Q9Y4B6 1507 aa50.19■■■■■ 5.62
TNFRSF4-201ENST00000379236 PABPN1Q86U42 306 aaKnown RBP eCLIP50.02■■■■■ 5.6
TNFRSF4-201ENST00000379236 BICRAQ9NZM4 1560 aa49.79■■■■■ 5.56
TNFRSF4-201ENST00000379236 DNAJC5BQ9UF47 199 aa49.63■■■■■ 5.54
TNFRSF4-201ENST00000379236 SCRIBQ14160 1630 aa49.56■■■■■ 5.52
TNFRSF4-201ENST00000379236 SHROOM4Q9ULL8 1493 aa49.27■■■■■ 5.48
TNFRSF4-201ENST00000379236 EIF4G1Q04637 1599 aaKnown RBP48.6■■■■■ 5.37
TNFRSF4-201ENST00000379236 CC2D2AQ9P2K1 1620 aa48.58■■■■■ 5.37
TNFRSF4-201ENST00000379236 CECR2Q9BXF3 1484 aa48.3■■■■■ 5.32
TNFRSF4-201ENST00000379236 SMARCA4P51532 1647 aa47.31■■■■■ 5.16
TNFRSF4-201ENST00000379236 BAZ1AQ9NRL2 1556 aaPredicted RBP47.17■■■■■ 5.14
TNFRSF4-201ENST00000379236 NCAPD3P42695 1498 aa47.14■■■■■ 5.14
TNFRSF4-201ENST00000379236 SMARCA2P51531 1590 aa47.12■■■■■ 5.13
TNFRSF4-201ENST00000379236 ATAD2BQ9ULI0 1458 aa47.11■■■■■ 5.13
TNFRSF4-201ENST00000379236 HMGXB3Q12766 1538 aa46.95■■■■■ 5.11
TNFRSF4-201ENST00000379236 PEG3Q9GZU2 1588 aa46.79■■■■■ 5.08
TNFRSF4-201ENST00000379236 BAZ1BQ9UIG0 1483 aaKnown RBP46.79■■■■■ 5.08
TNFRSF4-201ENST00000379236 MROH2BQ7Z745 1585 aa46.77■■■■■ 5.08
TNFRSF4-201ENST00000379236 ERCC6Q03468 1493 aa46.41■■■■■ 5.02
TNFRSF4-201ENST00000379236 WIZO95785 1651 aa46.33■■■■■ 5.01
TNFRSF4-201ENST00000379236 NESP48681 1621 aa46.25■■■■■ 4.99
TNFRSF4-201ENST00000379236 LAMC3Q9Y6N6 1575 aa46.13■■■■■ 4.98
TNFRSF4-201ENST00000379236 CUX2O14529 1486 aa46.06■■■■■ 4.96
TNFRSF4-201ENST00000379236 RSF1Q96T23 1441 aaPredicted RBP45.98■■■■■ 4.95
TNFRSF4-201ENST00000379236 KIF21AQ7Z4S6 1674 aa45.84■■■■■ 4.93
TNFRSF4-201ENST00000379236 PDS5BQ9NTI5 1447 aa45.8■■■■■ 4.92
TNFRSF4-201ENST00000379236 TOP2AP11388 1531 aaKnown RBP45.77■■■■■ 4.92
TNFRSF4-201ENST00000379236 CADPSQ9ULU8 1353 aa45.77■■■■■ 4.92
TNFRSF4-201ENST00000379236 THOC2Q8NI27 1593 aaKnown RBP45.74■■■■■ 4.91
TNFRSF4-201ENST00000379236 MRC2Q9UBG0 1479 aa45.37■■■■■ 4.85
TNFRSF4-201ENST00000379236 CFTRP13569 1480 aa45.36■■■■■ 4.85
TNFRSF4-201ENST00000379236 CEP164Q9UPV0 1460 aa45.35■■■■■ 4.85
TNFRSF4-201ENST00000379236 FANCD2Q9BXW9 1451 aa45.3■■■■■ 4.84
TNFRSF4-201ENST00000379236 PRDM2Q13029 1718 aa45.24■■■■■ 4.83
TNFRSF4-201ENST00000379236 WDR62O43379 1518 aa45.23■■■■■ 4.83
TNFRSF4-201ENST00000379236 DNAJC5Q9H3Z4 198 aa45.23■■■■■ 4.83
TNFRSF4-201ENST00000379236 CCDC88BA6NC98 1476 aa45.18■■■■■ 4.82
TNFRSF4-201ENST00000379236 URB2Q14146 1524 aaKnown RBP44.85■■■■■ 4.77
TNFRSF4-201ENST00000379236 ABCC8Q09428 1581 aa44.51■■■■■ 4.72
TNFRSF4-201ENST00000379236 TOPBP1Q92547 1522 aa44.5■■■■■ 4.71
TNFRSF4-201ENST00000379236 SUPT5HO00267 1087 aaKnown RBP44.49■■■■■ 4.71
TNFRSF4-201ENST00000379236 DNMBPQ6XZF7 1577 aa44.45■■■■■ 4.71
TNFRSF4-201ENST00000379236 IFT140Q96RY7 1462 aa44.39■■■■■ 4.7
TNFRSF4-201ENST00000379236 ZNF608Q9ULD9 1512 aaPredicted RBP44.19■■■■■ 4.66
TNFRSF4-201ENST00000379236 EIF4G3O43432 1585 aaKnown RBP44.1■■■■■ 4.65
TNFRSF4-201ENST00000379236 POLA1P09884 1462 aaPredicted RBP44.08■■■■■ 4.65
TNFRSF4-201ENST00000379236 TARBP1Q13395 1621 aaKnown RBP44.07■■■■■ 4.65
TNFRSF4-201ENST00000379236 OSCARQ8IYS5 282 aa44.01■■■■■ 4.64
TNFRSF4-201ENST00000379236 CUX1P39880 1505 aa43.94■■■■■ 4.62
TNFRSF4-201ENST00000379236 FGD5Q6ZNL6 1462 aa43.91■■■■■ 4.62
TNFRSF4-201ENST00000379236 SOGA1O94964 1423 aa43.89■■■■■ 4.62
TNFRSF4-201ENST00000379236 RAD54L2Q9Y4B4 1467 aa43.89■■■■■ 4.62
TNFRSF4-201ENST00000379236 AQRO60306 1485 aaKnown RBP eCLIP43.87■■■■■ 4.61
TNFRSF4-201ENST00000379236 WDR97A6NE52 1622 aa43.76■■■■■ 4.6
TNFRSF4-201ENST00000379236 CHD1O14646 1710 aa43.73■■■■■ 4.59
TNFRSF4-201ENST00000379236 TDRD9Q8NDG6 1382 aaKnown RBP43.69■■■■■ 4.59
TNFRSF4-201ENST00000379236 TRIM41Q8WV44 630 aa43.63■■■■■ 4.57
TNFRSF4-201ENST00000379236 FBLN2P98095 1184 aa43.56■■■■■ 4.56
TNFRSF4-201ENST00000379236 SNAPC4Q5SXM2 1469 aa43.51■■■■■ 4.56
TNFRSF4-201ENST00000379236 BIVM-ERCC5R4GMW8 1640 aa43.49■■■■■ 4.55
TNFRSF4-201ENST00000379236 PBRM1Q86U86 1689 aa43.49■■■■■ 4.55
TNFRSF4-201ENST00000379236 GRIN2BQ13224 1484 aa43.47■■■■■ 4.55
TNFRSF4-201ENST00000379236 RIMBP3CA6NJZ7 1639 aa43.46■■■■■ 4.55
TNFRSF4-201ENST00000379236 RIMBP3BA6NNM3 1639 aa43.46■■■■■ 4.55
TNFRSF4-201ENST00000379236 RIMBP3Q9UFD9 1639 aa43.46■■■■■ 4.55
TNFRSF4-201ENST00000379236 TOP2BQ02880 1626 aa43.45■■■■■ 4.55
TNFRSF4-201ENST00000379236 WRNQ14191 1432 aaPredicted RBP eCLIP43.45■■■■■ 4.55
TNFRSF4-201ENST00000379236 MAGI1Q96QZ7 1491 aaPredicted RBP43.43■■■■■ 4.54
TNFRSF4-201ENST00000379236 ABCA10Q8WWZ4 1543 aa43.43■■■■■ 4.54
TNFRSF4-201ENST00000379236 SYNJ1O43426 1573 aa43.4■■■■■ 4.54
TNFRSF4-201ENST00000379236 GAPVD1Q14C86 1478 aa43.39■■■■■ 4.54
TNFRSF4-201ENST00000379236 ABCA5Q8WWZ7 1642 aa43.36■■■■■ 4.53
TNFRSF4-201ENST00000379236 ARHGEF11O15085 1522 aa43.32■■■■■ 4.53
TNFRSF4-201ENST00000379236 CHMP7Q8WUX9 453 aaPredicted RBP43.32■■■■■ 4.53
TNFRSF4-201ENST00000379236 SYNJ2O15056 1496 aa43.25■■■■■ 4.51
TNFRSF4-201ENST00000379236 CLASP1Q7Z460 1538 aa43.1■■■■■ 4.49
TNFRSF4-201ENST00000379236 ADAMTS12P58397 1594 aa43■■■■■ 4.47
TNFRSF4-201ENST00000379236 ERICH3Q5RHP9 1530 aa42.94■■■■■ 4.46
TNFRSF4-201ENST00000379236 CYB5RLQ6IPT4 315 aa42.94■■■■■ 4.46
TNFRSF4-201ENST00000379236 ARAP1Q96P48 1450 aa42.91■■■■■ 4.46
TNFRSF4-201ENST00000379236 GRIN2AQ12879 1464 aa42.9■■■■■ 4.46
TNFRSF4-201ENST00000379236 FHAD1B1AJZ9 1412 aa42.86■■■■■ 4.45
TNFRSF4-201ENST00000379236 CEP170Q5SW79 1584 aa42.73■■■■■ 4.43
TNFRSF4-201ENST00000379236 NUP160Q12769 1436 aa42.68■■■■■ 4.42
TNFRSF4-201ENST00000379236 KIF27Q86VH2 1401 aa42.61■■■■■ 4.41
TNFRSF4-201ENST00000379236 CUL7Q14999 1698 aa42.53■■■■■ 4.4
TNFRSF4-201ENST00000379236 SHROOM2Q13796 1616 aa42.5■■■■■ 4.39
TNFRSF4-201ENST00000379236 ERCC6L2Q5T890 1561 aa42.44■■■■■ 4.39
TNFRSF4-201ENST00000379236 IGF1RP08069 1367 aa42.39■■■■■ 4.38
TNFRSF4-201ENST00000379236 RUSC2Q8N2Y8 1516 aa42.39■■■■■ 4.38
TNFRSF4-201ENST00000379236 TRHP20396 242 aaPredicted RBP42.37■■■■■ 4.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms