RNA–Protein interactions for RNA: ENST00000454181.6

LYSMD2-202, Transcript of LysM domain containing 2, humanhuman

TSL 1 (best) BASIC

Gene LYSMD2, Length 1,228 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD2-202ENST00000454181 NISCHQ9Y2I1 1504 aa59.39■■■■■ 7.1
LYSMD2-202ENST00000454181 ABCC9O60706 1549 aa53.58■■■■■ 6.17
LYSMD2-202ENST00000454181 CCDC180Q9P1Z9 1646 aa53.3■■■■■ 6.12
LYSMD2-202ENST00000454181 RB1CC1Q8TDY2 1594 aa50.9■■■■■ 5.74
LYSMD2-202ENST00000454181 NACADO15069 1562 aa50.51■■■■■ 5.68
LYSMD2-202ENST00000454181 DCAF8L2P0C7V8 631 aa50.47■■■■■ 5.67
LYSMD2-202ENST00000454181 DNAJC5BQ9UF47 199 aa50.36■■■■■ 5.65
LYSMD2-202ENST00000454181 PABPN1Q86U42 306 aaKnown RBP eCLIP49.92■■■■■ 5.58
LYSMD2-202ENST00000454181 MYO15BQ96JP2 1530 aa49.72■■■■■ 5.55
LYSMD2-202ENST00000454181 UNC13AQ9UPW8 1703 aa49.56■■■■■ 5.52
LYSMD2-202ENST00000454181 BICRAQ9NZM4 1560 aa49.31■■■■■ 5.48
LYSMD2-202ENST00000454181 ZCCHC6Q5VYS8 1495 aaKnown RBP49.15■■■■■ 5.46
LYSMD2-202ENST00000454181 DCAF1Q9Y4B6 1507 aa49.02■■■■■ 5.44
LYSMD2-202ENST00000454181 SHROOM4Q9ULL8 1493 aa48.72■■■■■ 5.39
LYSMD2-202ENST00000454181 SCRIBQ14160 1630 aa48.61■■■■■ 5.37
LYSMD2-202ENST00000454181 CC2D2AQ9P2K1 1620 aa48.32■■■■■ 5.33
LYSMD2-202ENST00000454181 CECR2Q9BXF3 1484 aa48.29■■■■■ 5.32
LYSMD2-202ENST00000454181 EIF4G1Q04637 1599 aaKnown RBP48.18■■■■■ 5.3
LYSMD2-202ENST00000454181 NCAPD3P42695 1498 aa46.64■■■■■ 5.06
LYSMD2-202ENST00000454181 ATAD2BQ9ULI0 1458 aa46.46■■■■■ 5.03
LYSMD2-202ENST00000454181 DNAJC5Q9H3Z4 198 aa46.45■■■■■ 5.03
LYSMD2-202ENST00000454181 SMARCA2P51531 1590 aa46.35■■■■■ 5.01
LYSMD2-202ENST00000454181 ERCC6Q03468 1493 aa46.35■■■■■ 5.01
LYSMD2-202ENST00000454181 SMARCA4P51532 1647 aa46.33■■■■■ 5.01
LYSMD2-202ENST00000454181 CUX2O14529 1486 aa46.23■■■■■ 4.99
LYSMD2-202ENST00000454181 HMGXB3Q12766 1538 aa46.23■■■■■ 4.99
LYSMD2-202ENST00000454181 BAZ1AQ9NRL2 1556 aaPredicted RBP46.13■■■■■ 4.98
LYSMD2-202ENST00000454181 BAZ1BQ9UIG0 1483 aaKnown RBP46.06■■■■■ 4.96
LYSMD2-202ENST00000454181 NESP48681 1621 aa45.92■■■■■ 4.94
LYSMD2-202ENST00000454181 PEG3Q9GZU2 1588 aa45.85■■■■■ 4.93
LYSMD2-202ENST00000454181 MROH2BQ7Z745 1585 aa45.75■■■■■ 4.91
LYSMD2-202ENST00000454181 LAMC3Q9Y6N6 1575 aa45.59■■■■■ 4.89
LYSMD2-202ENST00000454181 PDS5BQ9NTI5 1447 aa45.44■■■■■ 4.87
LYSMD2-202ENST00000454181 THOC2Q8NI27 1593 aaKnown RBP45.41■■■■■ 4.86
LYSMD2-202ENST00000454181 KIF21AQ7Z4S6 1674 aa45.26■■■■■ 4.84
LYSMD2-202ENST00000454181 CADPSQ9ULU8 1353 aa45.26■■■■■ 4.84
LYSMD2-202ENST00000454181 WIZO95785 1651 aa45.16■■■■■ 4.82
LYSMD2-202ENST00000454181 MRC2Q9UBG0 1479 aa44.99■■■■■ 4.79
LYSMD2-202ENST00000454181 WDR62O43379 1518 aa44.82■■■■■ 4.77
LYSMD2-202ENST00000454181 CEP164Q9UPV0 1460 aa44.8■■■■■ 4.76
LYSMD2-202ENST00000454181 RSF1Q96T23 1441 aaPredicted RBP44.78■■■■■ 4.76
LYSMD2-202ENST00000454181 FANCD2Q9BXW9 1451 aa44.72■■■■■ 4.75
LYSMD2-202ENST00000454181 CFTRP13569 1480 aa44.66■■■■■ 4.74
LYSMD2-202ENST00000454181 TOP2AP11388 1531 aaKnown RBP44.62■■■■■ 4.73
LYSMD2-202ENST00000454181 TRIM41Q8WV44 630 aa44.44■■■■■ 4.7
LYSMD2-202ENST00000454181 URB2Q14146 1524 aaKnown RBP44.3■■■■■ 4.68
LYSMD2-202ENST00000454181 OSCARQ8IYS5 282 aa44.22■■■■■ 4.67
LYSMD2-202ENST00000454181 CCDC88BA6NC98 1476 aa44.15■■■■■ 4.66
LYSMD2-202ENST00000454181 PRDM2Q13029 1718 aa44.07■■■■■ 4.64
LYSMD2-202ENST00000454181 IFT140Q96RY7 1462 aa43.91■■■■■ 4.62
LYSMD2-202ENST00000454181 TOPBP1Q92547 1522 aa43.83■■■■■ 4.61
LYSMD2-202ENST00000454181 ABCC8Q09428 1581 aa43.8■■■■■ 4.6
LYSMD2-202ENST00000454181 ZNF608Q9ULD9 1512 aaPredicted RBP43.8■■■■■ 4.6
LYSMD2-202ENST00000454181 DNMBPQ6XZF7 1577 aa43.64■■■■■ 4.58
LYSMD2-202ENST00000454181 EIF4G3O43432 1585 aaKnown RBP43.52■■■■■ 4.56
LYSMD2-202ENST00000454181 RIMBP3CA6NJZ7 1639 aa43.48■■■■■ 4.55
LYSMD2-202ENST00000454181 RIMBP3BA6NNM3 1639 aa43.48■■■■■ 4.55
LYSMD2-202ENST00000454181 RIMBP3Q9UFD9 1639 aa43.48■■■■■ 4.55
LYSMD2-202ENST00000454181 AQRO60306 1485 aaKnown RBP eCLIP43.44■■■■■ 4.54
LYSMD2-202ENST00000454181 TARBP1Q13395 1621 aaKnown RBP43.38■■■■■ 4.54
LYSMD2-202ENST00000454181 POLA1P09884 1462 aaPredicted RBP43.37■■■■■ 4.53
LYSMD2-202ENST00000454181 ARHGEF11O15085 1522 aa43.36■■■■■ 4.53
LYSMD2-202ENST00000454181 FBLN2P98095 1184 aa43.35■■■■■ 4.53
LYSMD2-202ENST00000454181 SOGA1O94964 1423 aa43.26■■■■■ 4.52
LYSMD2-202ENST00000454181 RAD54L2Q9Y4B4 1467 aa43.23■■■■■ 4.51
LYSMD2-202ENST00000454181 CYB5RLQ6IPT4 315 aa43.21■■■■■ 4.51
LYSMD2-202ENST00000454181 CHD1O14646 1710 aa43.19■■■■■ 4.51
LYSMD2-202ENST00000454181 TDRD9Q8NDG6 1382 aaKnown RBP43.18■■■■■ 4.5
LYSMD2-202ENST00000454181 FGD5Q6ZNL6 1462 aa43.09■■■■■ 4.49
LYSMD2-202ENST00000454181 CUX1P39880 1505 aa42.98■■■■■ 4.47
LYSMD2-202ENST00000454181 CHMP7Q8WUX9 453 aaPredicted RBP42.98■■■■■ 4.47
LYSMD2-202ENST00000454181 WDR97A6NE52 1622 aa42.97■■■■■ 4.47
LYSMD2-202ENST00000454181 SNAPC4Q5SXM2 1469 aa42.97■■■■■ 4.47
LYSMD2-202ENST00000454181 ARAP1Q96P48 1450 aa42.91■■■■■ 4.46
LYSMD2-202ENST00000454181 GRIN2BQ13224 1484 aa42.87■■■■■ 4.45
LYSMD2-202ENST00000454181 MAGI1Q96QZ7 1491 aaPredicted RBP42.87■■■■■ 4.45
LYSMD2-202ENST00000454181 SUPT5HO00267 1087 aaKnown RBP42.86■■■■■ 4.45
LYSMD2-202ENST00000454181 TRHP20396 242 aaPredicted RBP42.85■■■■■ 4.45
LYSMD2-202ENST00000454181 SYNJ1O43426 1573 aa42.77■■■■■ 4.44
LYSMD2-202ENST00000454181 SYNJ2O15056 1496 aa42.73■■■■■ 4.43
LYSMD2-202ENST00000454181 CLASP1Q7Z460 1538 aa42.71■■■■■ 4.43
LYSMD2-202ENST00000454181 GAPVD1Q14C86 1478 aa42.69■■■■■ 4.42
LYSMD2-202ENST00000454181 ABCA10Q8WWZ4 1543 aa42.58■■■■■ 4.41
LYSMD2-202ENST00000454181 PBRM1Q86U86 1689 aa42.56■■■■■ 4.4
LYSMD2-202ENST00000454181 WRNQ14191 1432 aaPredicted RBP eCLIP42.46■■■■■ 4.39
LYSMD2-202ENST00000454181 ABCA5Q8WWZ7 1642 aa42.46■■■■■ 4.39
LYSMD2-202ENST00000454181 GRIN2AQ12879 1464 aa42.29■■■■■ 4.36
LYSMD2-202ENST00000454181 TOP2BQ02880 1626 aa42.25■■■■■ 4.35
LYSMD2-202ENST00000454181 BIVM-ERCC5R4GMW8 1640 aa42.22■■■■■ 4.35
LYSMD2-202ENST00000454181 ADAMTS12P58397 1594 aa42.18■■■■■ 4.34
LYSMD2-202ENST00000454181 FHAD1B1AJZ9 1412 aa42.16■■■■■ 4.34
LYSMD2-202ENST00000454181 NUP160Q12769 1436 aa42.12■■■■■ 4.33
LYSMD2-202ENST00000454181 CEP170Q5SW79 1584 aa42.08■■■■■ 4.33
LYSMD2-202ENST00000454181 ERICH3Q5RHP9 1530 aa42.05■■■■■ 4.32
LYSMD2-202ENST00000454181 ERCC6L2Q5T890 1561 aa42.04■■■■■ 4.32
LYSMD2-202ENST00000454181 SHROOM2Q13796 1616 aa41.88■■■■■ 4.3
LYSMD2-202ENST00000454181 JPH4Q96JJ6 628 aa41.83■■■■■ 4.29
LYSMD2-202ENST00000454181 PRG4Q92954 1404 aaPredicted RBP41.81■■■■■ 4.28
LYSMD2-202ENST00000454181 AEBP2Q6ZN18 517 aaPredicted RBP41.76■■■■■ 4.28
LYSMD2-202ENST00000454181 NPM1P06748 294 aaKnown RBP eCLIP41.58■■■■■ 4.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms