Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
FOXA2Q9Y261 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
FOXA2Q9Y261 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA2Q9Y261 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA2Q9Y261 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA2Q9Y261 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA2Q9Y261 AL133380.1-201ENST00000506013 324 ntBASIC21.49■■□□□ 1.03
FOXA2Q9Y261 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXA2Q9Y261 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXA2Q9Y261 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXA2Q9Y261 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXA2Q9Y261 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXA2Q9Y261 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXA2Q9Y261 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
FOXA2Q9Y261 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
FOXA2Q9Y261 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
FOXA2Q9Y261 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXA2Q9Y261 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
FOXA2Q9Y261 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
FOXA2Q9Y261 AC097358.2-201ENST00000607541 1159 ntBASIC21.43■■□□□ 1.02
FOXA2Q9Y261 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
FOXA2Q9Y261 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
FOXA2Q9Y261 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA2Q9Y261 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA2Q9Y261 AC139426.1-201ENST00000568218 2529 ntBASIC21.39■■□□□ 1.02
FOXA2Q9Y261 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.39■■□□□ 1.01
FOXA2Q9Y261 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXA2Q9Y261 AL135925.1-201ENST00000605920 1701 ntBASIC21.38■■□□□ 1.01
FOXA2Q9Y261 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXA2Q9Y261 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXA2Q9Y261 AC136428.2-201ENST00000563187 214 ntBASIC21.38■■□□□ 1.01
FOXA2Q9Y261 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
FOXA2Q9Y261 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA2Q9Y261 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXA2Q9Y261 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.33■■□□□ 1
FOXA2Q9Y261 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.33■■□□□ 1
FOXA2Q9Y261 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
FOXA2Q9Y261 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXA2Q9Y261 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.31■■□□□ 1
FOXA2Q9Y261 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXA2Q9Y261 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.31■■□□□ 1
FOXA2Q9Y261 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
FOXA2Q9Y261 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA2Q9Y261 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.3■■□□□ 1
FOXA2Q9Y261 WASH5P-204ENST00000632292 975 ntBASIC21.3■■□□□ 1
FOXA2Q9Y261 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.29■■□□□ 1
FOXA2Q9Y261 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.29■■□□□ 1
FOXA2Q9Y261 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA2Q9Y261 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.28■■□□□ 1
FOXA2Q9Y261 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
FOXA2Q9Y261 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXA2Q9Y261 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
FOXA2Q9Y261 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 AL391121.1-201ENST00000607967 1349 ntBASIC21.26■□□□□ 0.99
FOXA2Q9Y261 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 CAHM-201ENST00000604200 896 ntBASIC21.23■□□□□ 0.99
FOXA2Q9Y261 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA2Q9Y261 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA2Q9Y261 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA2Q9Y261 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms