Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
HIST1H1AQ02539 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
HIST1H1AQ02539 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HIST1H1AQ02539 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HIST1H1AQ02539 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HIST1H1AQ02539 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HIST1H1AQ02539 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
HIST1H1AQ02539 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.09■□□□□ 0.81
HIST1H1AQ02539 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HIST1H1AQ02539 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HIST1H1AQ02539 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HIST1H1AQ02539 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HIST1H1AQ02539 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HIST1H1AQ02539 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.07■□□□□ 0.8
HIST1H1AQ02539 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HIST1H1AQ02539 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HIST1H1AQ02539 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HIST1H1AQ02539 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
HIST1H1AQ02539 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HIST1H1AQ02539 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HIST1H1AQ02539 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HIST1H1AQ02539 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HIST1H1AQ02539 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HIST1H1AQ02539 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.03■□□□□ 0.8
HIST1H1AQ02539 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HIST1H1AQ02539 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
HIST1H1AQ02539 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HIST1H1AQ02539 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC20.01■□□□□ 0.79
HIST1H1AQ02539 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HIST1H1AQ02539 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
HIST1H1AQ02539 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HIST1H1AQ02539 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HIST1H1AQ02539 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
HIST1H1AQ02539 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
HIST1H1AQ02539 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.98■□□□□ 0.79
HIST1H1AQ02539 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HIST1H1AQ02539 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HIST1H1AQ02539 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HIST1H1AQ02539 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIST1H1AQ02539 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIST1H1AQ02539 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIST1H1AQ02539 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HIST1H1AQ02539 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIST1H1AQ02539 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HIST1H1AQ02539 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HIST1H1AQ02539 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
HIST1H1AQ02539 AL133380.1-201ENST00000506013 324 ntBASIC19.95■□□□□ 0.78
HIST1H1AQ02539 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HIST1H1AQ02539 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIST1H1AQ02539 WASH5P-204ENST00000632292 975 ntBASIC19.94■□□□□ 0.78
HIST1H1AQ02539 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC19.94■□□□□ 0.78
HIST1H1AQ02539 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIST1H1AQ02539 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HIST1H1AQ02539 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC19.93■□□□□ 0.78
HIST1H1AQ02539 ST7-AS1-201ENST00000456775 1889 ntBASIC19.93■□□□□ 0.78
HIST1H1AQ02539 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HIST1H1AQ02539 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HIST1H1AQ02539 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
HIST1H1AQ02539 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
HIST1H1AQ02539 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HIST1H1AQ02539 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
HIST1H1AQ02539 RARRES2P7-201ENST00000567349 469 ntBASIC19.91■□□□□ 0.78
HIST1H1AQ02539 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.9■□□□□ 0.78
HIST1H1AQ02539 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HIST1H1AQ02539 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HIST1H1AQ02539 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HIST1H1AQ02539 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIST1H1AQ02539 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.88■□□□□ 0.77
HIST1H1AQ02539 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIST1H1AQ02539 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIST1H1AQ02539 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIST1H1AQ02539 AC135731.1-201ENST00000569415 2548 ntBASIC19.87■□□□□ 0.77
HIST1H1AQ02539 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.87■□□□□ 0.77
HIST1H1AQ02539 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIST1H1AQ02539 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIST1H1AQ02539 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
HIST1H1AQ02539 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HIST1H1AQ02539 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HIST1H1AQ02539 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HIST1H1AQ02539 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.85■□□□□ 0.77
HIST1H1AQ02539 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HIST1H1AQ02539 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HIST1H1AQ02539 SETD8P1-201ENST00000623146 1180 ntBASIC19.84■□□□□ 0.77
HIST1H1AQ02539 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HIST1H1AQ02539 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.83■□□□□ 0.77
HIST1H1AQ02539 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.83■□□□□ 0.77
HIST1H1AQ02539 AL135925.1-201ENST00000605920 1701 ntBASIC19.83■□□□□ 0.77
HIST1H1AQ02539 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HIST1H1AQ02539 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HIST1H1AQ02539 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.83■□□□□ 0.76
HIST1H1AQ02539 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HIST1H1AQ02539 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HIST1H1AQ02539 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIST1H1AQ02539 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms