RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 NISCHQ9Y2I1 1504 aa47.17■■■■■ 5.14
SOX1-201ENST00000330949 HRCP23327 699 aa41.15■■■■■ 4.18
SOX1-201ENST00000330949 SHROOM4Q9ULL8 1493 aa41.03■■■■■ 4.16
SOX1-201ENST00000330949 SUPT5HO00267 1087 aaKnown RBP40.32■■■■■ 4.05
SOX1-201ENST00000330949 PELP1Q8IZL8 1130 aaKnown RBP40.21■■■■■ 4.03
SOX1-201ENST00000330949 PCGF6Q9BYE7 350 aa40.06■■■■■ 4
SOX1-201ENST00000330949 PPARGC1BQ86YN6 1023 aaKnown RBP39.97■■■■□ 3.99
SOX1-201ENST00000330949 DCAF8L2P0C7V8 631 aa39.93■■■■□ 3.98
SOX1-201ENST00000330949 MYO15BQ96JP2 1530 aa39.89■■■■□ 3.98
SOX1-201ENST00000330949 ZCCHC6Q5VYS8 1495 aaKnown RBP39.84■■■■□ 3.97
SOX1-201ENST00000330949 CCDC180Q9P1Z9 1646 aa39.75■■■■□ 3.95
SOX1-201ENST00000330949 CHIC1Q5VXU3 224 aa39.65■■■■□ 3.94
SOX1-201ENST00000330949 DCAF1Q9Y4B6 1507 aa39.42■■■■□ 3.9
SOX1-201ENST00000330949 TRIM26Q12899 539 aaPredicted RBP38.95■■■■□ 3.83
SOX1-201ENST00000330949 SCAF1Q9H7N4 1312 aaKnown RBP38.88■■■■□ 3.81
SOX1-201ENST00000330949 ZEB1P37275 1124 aaPredicted RBP38.86■■■■□ 3.81
SOX1-201ENST00000330949 MYT1Q01538 1121 aa38.81■■■■□ 3.8
SOX1-201ENST00000330949 LOC105371045A0A1W2PR82 267 aa38.55■■■■□ 3.76
SOX1-201ENST00000330949 ACIN1Q9UKV3 1341 aaKnown RBP38.01■■■■□ 3.68
SOX1-201ENST00000330949 NEUROD1Q13562 356 aa37.77■■■■□ 3.64
SOX1-201ENST00000330949 SCRIBQ14160 1630 aa37.76■■■■□ 3.64
SOX1-201ENST00000330949 CENPBP07199 599 aaPredicted RBP37.63■■■■□ 3.61
SOX1-201ENST00000330949 GTF3C3Q9Y5Q9 886 aa37.61■■■■□ 3.61
SOX1-201ENST00000330949 ABCC9O60706 1549 aa37.54■■■■□ 3.6
SOX1-201ENST00000330949 RSF1Q96T23 1441 aaPredicted RBP37.47■■■■□ 3.59
SOX1-201ENST00000330949 EHMT2Q96KQ7 1210 aa37.46■■■■□ 3.59
SOX1-201ENST00000330949 FAM9AQ8IZU1 332 aaPredicted RBP37.41■■■■□ 3.58
SOX1-201ENST00000330949 DIEXFQ68CQ4 756 aaKnown RBP37.26■■■■□ 3.55
SOX1-201ENST00000330949 TRIM41Q8WV44 630 aa37.26■■■■□ 3.55
SOX1-201ENST00000330949 CCER1Q8TC90 406 aaPredicted RBP37.11■■■■□ 3.53
SOX1-201ENST00000330949 RB1CC1Q8TDY2 1594 aa37.1■■■■□ 3.53
SOX1-201ENST00000330949 CECR2Q9BXF3 1484 aa37.08■■■■□ 3.53
SOX1-201ENST00000330949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.05■■■■□ 3.52
SOX1-201ENST00000330949 NACADO15069 1562 aa36.88■■■■□ 3.49
SOX1-201ENST00000330949 MROH2BQ7Z745 1585 aa36.84■■■■□ 3.49
SOX1-201ENST00000330949 WIZO95785 1651 aa36.64■■■■□ 3.46
SOX1-201ENST00000330949 ZNF316A6NFI3 1004 aaPredicted RBP36.55■■■■□ 3.44
SOX1-201ENST00000330949 TTBK1Q5TCY1 1321 aaPredicted RBP36.47■■■■□ 3.43
SOX1-201ENST00000330949 YTHDC1Q96MU7 727 aaKnown RBP36.46■■■■□ 3.43
SOX1-201ENST00000330949 WRNQ14191 1432 aaPredicted RBP eCLIP36.2■■■■□ 3.39
SOX1-201ENST00000330949 MIER1Q8N108 512 aa36.2■■■■□ 3.39
SOX1-201ENST00000330949 CLSPNQ9HAW4 1339 aa36.14■■■■□ 3.38
SOX1-201ENST00000330949 BAZ1AQ9NRL2 1556 aaPredicted RBP36.13■■■■□ 3.38
SOX1-201ENST00000330949 PABPN1Q86U42 306 aaKnown RBP eCLIP36.07■■■■□ 3.37
SOX1-201ENST00000330949 ANP32EQ9BTT0 268 aa35.95■■■■□ 3.35
SOX1-201ENST00000330949 ABCC8Q09428 1581 aa35.94■■■■□ 3.34
SOX1-201ENST00000330949 UNC13AQ9UPW8 1703 aa35.91■■■■□ 3.34
SOX1-201ENST00000330949 CCDC88BA6NC98 1476 aa35.91■■■■□ 3.34
SOX1-201ENST00000330949 EIF4G1Q04637 1599 aaKnown RBP35.9■■■■□ 3.34
SOX1-201ENST00000330949 SMARCA4P51532 1647 aa35.89■■■■□ 3.34
SOX1-201ENST00000330949 BCL11AQ9H165 835 aa35.88■■■■□ 3.33
SOX1-201ENST00000330949 SUPT16HQ9Y5B9 1047 aaKnown RBP35.83■■■■□ 3.33
SOX1-201ENST00000330949 TOP2AP11388 1531 aaKnown RBP35.82■■■■□ 3.32
SOX1-201ENST00000330949 CEP162Q5TB80 1403 aa35.81■■■■□ 3.32
SOX1-201ENST00000330949 SMARCA2P51531 1590 aa35.73■■■■□ 3.31
SOX1-201ENST00000330949 TSHZ2Q9NRE2 1034 aa35.69■■■■□ 3.3
SOX1-201ENST00000330949 SOGA1O94964 1423 aa35.64■■■■□ 3.3
SOX1-201ENST00000330949 TNIKQ9UKE5 1360 aa35.63■■■■□ 3.29
SOX1-201ENST00000330949 UBTFP17480 764 aaKnown RBP35.61■■■■□ 3.29
SOX1-201ENST00000330949 RUSC2Q8N2Y8 1516 aa35.53■■■■□ 3.28
SOX1-201ENST00000330949 BICRAQ9NZM4 1560 aa35.53■■■■□ 3.28
SOX1-201ENST00000330949 CSRNP3Q8WYN3 585 aa35.4■■■■□ 3.26
SOX1-201ENST00000330949 HNRNPUL2Q1KMD3 747 aaKnown RBP35.36■■■■□ 3.25
SOX1-201ENST00000330949 RANGAP1P46060 587 aaPredicted RBP35.34■■■■□ 3.25
SOX1-201ENST00000330949 EEA1Q15075 1411 aa35.32■■■■□ 3.25
SOX1-201ENST00000330949 GOLGA3Q08378 1498 aa35.16■■■■□ 3.22
SOX1-201ENST00000330949 ATAD2BQ9ULI0 1458 aa35.06■■■■□ 3.2
SOX1-201ENST00000330949 PEG3Q9GZU2 1588 aa35.01■■■■□ 3.2
SOX1-201ENST00000330949 SYNJ1O43426 1573 aa35.01■■■■□ 3.19
SOX1-201ENST00000330949 BAZ1BQ9UIG0 1483 aaKnown RBP34.96■■■■□ 3.19
SOX1-201ENST00000330949 DHX57Q6P158 1386 aaKnown RBP34.88■■■■□ 3.17
SOX1-201ENST00000330949 VPS8Q8N3P4 1428 aa34.87■■■■□ 3.17
SOX1-201ENST00000330949 RBM19Q9Y4C8 960 aaKnown RBP34.86■■■■□ 3.17
SOX1-201ENST00000330949 APLP2Q06481 763 aa34.86■■■■□ 3.17
SOX1-201ENST00000330949 BCANQ96GW7 911 aa34.84■■■■□ 3.17
SOX1-201ENST00000330949 CLIP1P30622 1438 aa34.82■■■■□ 3.16
SOX1-201ENST00000330949 FKBP8Q14318 412 aa34.8■■■■□ 3.16
SOX1-201ENST00000330949 CEP164Q9UPV0 1460 aa34.8■■■■□ 3.16
SOX1-201ENST00000330949 KIF21BO75037 1637 aa34.75■■■■□ 3.15
SOX1-201ENST00000330949 RAPGEF2Q9Y4G8 1499 aa34.69■■■■□ 3.14
SOX1-201ENST00000330949 NEFLP07196 543 aa34.67■■■■□ 3.14
SOX1-201ENST00000330949 KCNH8Q96L42 1107 aa34.61■■■■□ 3.13
SOX1-201ENST00000330949 PRKCSHP14314 528 aaPredicted RBP34.51■■■■□ 3.12
SOX1-201ENST00000330949 MSH5O43196 834 aa34.47■■■■□ 3.11
SOX1-201ENST00000330949 FANCIQ9NVI1 1328 aa34.43■■■■□ 3.1
SOX1-201ENST00000330949 TOP2BQ02880 1626 aa34.4■■■■□ 3.1
SOX1-201ENST00000330949 MYT1LQ9UL68 1186 aa34.4■■■■□ 3.1
SOX1-201ENST00000330949 CUX2O14529 1486 aa34.38■■■■□ 3.09
SOX1-201ENST00000330949 ERICH6Q7L0X2 663 aa34.35■■■■□ 3.09
SOX1-201ENST00000330949 ITGAEP38570 1179 aa34.33■■■■□ 3.09
SOX1-201ENST00000330949 RRBP1Q9P2E9 1410 aaKnown RBP34.29■■■■□ 3.08
SOX1-201ENST00000330949 NCAPD3P42695 1498 aa34.27■■■■□ 3.08
SOX1-201ENST00000330949 KANK4Q5T7N3 995 aaPredicted RBP34.26■■■■□ 3.08
SOX1-201ENST00000330949 CUX1P39880 1505 aa34.24■■■■□ 3.07
SOX1-201ENST00000330949 CCER2I3L3R5 266 aa34.22■■■■□ 3.07
SOX1-201ENST00000330949 DDX10Q13206 875 aaKnown RBP34.21■■■■□ 3.07
SOX1-201ENST00000330949 BIVM-ERCC5R4GMW8 1640 aa34.19■■■■□ 3.06
SOX1-201ENST00000330949 PRXQ9BXM0 1461 aa34.16■■■■□ 3.06
SOX1-201ENST00000330949 CDK11AQ9UQ88 783 aaPredicted RBP34.15■■■■□ 3.06
SOX1-201ENST00000330949 TRIM52Q96A61 297 aa34.13■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms