Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
FOXA1P55317 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
FOXA1P55317 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
FOXA1P55317 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
FOXA1P55317 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
FOXA1P55317 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.92■■□□□ 1.74
FOXA1P55317 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
FOXA1P55317 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
FOXA1P55317 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
FOXA1P55317 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
FOXA1P55317 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
FOXA1P55317 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
FOXA1P55317 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.89■■□□□ 1.74
FOXA1P55317 AL135925.1-201ENST00000605920 1701 ntBASIC25.88■■□□□ 1.73
FOXA1P55317 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
FOXA1P55317 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
FOXA1P55317 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
FOXA1P55317 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
FOXA1P55317 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
FOXA1P55317 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
FOXA1P55317 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
FOXA1P55317 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.84■■□□□ 1.73
FOXA1P55317 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
FOXA1P55317 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.82■■□□□ 1.72
FOXA1P55317 WASH5P-204ENST00000632292 975 ntBASIC25.82■■□□□ 1.72
FOXA1P55317 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
FOXA1P55317 AL133380.1-201ENST00000506013 324 ntBASIC25.8■■□□□ 1.72
FOXA1P55317 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.8■■□□□ 1.72
FOXA1P55317 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.79■■□□□ 1.72
FOXA1P55317 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
FOXA1P55317 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.79■■□□□ 1.72
FOXA1P55317 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.79■■□□□ 1.72
FOXA1P55317 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.79■■□□□ 1.72
FOXA1P55317 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.77■■□□□ 1.72
FOXA1P55317 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.77■■□□□ 1.72
FOXA1P55317 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
FOXA1P55317 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.75■■□□□ 1.71
FOXA1P55317 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
FOXA1P55317 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.73■■□□□ 1.71
FOXA1P55317 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
FOXA1P55317 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
FOXA1P55317 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
FOXA1P55317 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
FOXA1P55317 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
FOXA1P55317 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
FOXA1P55317 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
FOXA1P55317 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.68■■□□□ 1.7
FOXA1P55317 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.68■■□□□ 1.7
FOXA1P55317 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
FOXA1P55317 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
FOXA1P55317 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
FOXA1P55317 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
FOXA1P55317 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
FOXA1P55317 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
FOXA1P55317 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
FOXA1P55317 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
FOXA1P55317 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
FOXA1P55317 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
FOXA1P55317 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
FOXA1P55317 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
FOXA1P55317 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
FOXA1P55317 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
FOXA1P55317 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
FOXA1P55317 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.62■■□□□ 1.69
FOXA1P55317 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.62■■□□□ 1.69
FOXA1P55317 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
FOXA1P55317 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
FOXA1P55317 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
FOXA1P55317 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
FOXA1P55317 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
FOXA1P55317 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
FOXA1P55317 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
FOXA1P55317 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
FOXA1P55317 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
FOXA1P55317 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
FOXA1P55317 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
FOXA1P55317 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
FOXA1P55317 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
FOXA1P55317 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
FOXA1P55317 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
FOXA1P55317 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
FOXA1P55317 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
FOXA1P55317 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
FOXA1P55317 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.55■■□□□ 1.68
FOXA1P55317 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
FOXA1P55317 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.55■■□□□ 1.68
FOXA1P55317 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
FOXA1P55317 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.54■■□□□ 1.68
FOXA1P55317 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
FOXA1P55317 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
FOXA1P55317 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
FOXA1P55317 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
FOXA1P55317 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
FOXA1P55317 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
FOXA1P55317 AL139393.2-201ENST00000608721 2025 ntBASIC25.52■■□□□ 1.68
FOXA1P55317 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
FOXA1P55317 RARRES2P7-201ENST00000567349 469 ntBASIC25.51■■□□□ 1.67
FOXA1P55317 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
FOXA1P55317 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
FOXA1P55317 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms