Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
FOXA1P55317 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC32.48■■■□□ 2.79
FOXA1P55317 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.13■■■□□ 2.73
FOXA1P55317 AL356512.1-201ENST00000607453 1739 ntBASIC32.05■■■□□ 2.72
FOXA1P55317 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.93■■■□□ 2.7
FOXA1P55317 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
FOXA1P55317 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
FOXA1P55317 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.69■■■□□ 2.66
FOXA1P55317 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
FOXA1P55317 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.3■■■□□ 2.6
FOXA1P55317 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
FOXA1P55317 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.1■■■□□ 2.57
FOXA1P55317 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
FOXA1P55317 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.77■■■□□ 2.52
FOXA1P55317 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.74■■■□□ 2.51
FOXA1P55317 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
FOXA1P55317 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
FOXA1P55317 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
FOXA1P55317 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
FOXA1P55317 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
FOXA1P55317 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC30.46■■■□□ 2.47
FOXA1P55317 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
FOXA1P55317 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
FOXA1P55317 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
FOXA1P55317 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
FOXA1P55317 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
FOXA1P55317 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.95■■■□□ 2.39
FOXA1P55317 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
FOXA1P55317 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
FOXA1P55317 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.85■■■□□ 2.37
FOXA1P55317 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
FOXA1P55317 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.82■■■□□ 2.36
FOXA1P55317 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.81■■■□□ 2.36
FOXA1P55317 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
FOXA1P55317 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC29.76■■■□□ 2.35
FOXA1P55317 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.61■■■□□ 2.33
FOXA1P55317 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
FOXA1P55317 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC29.52■■■□□ 2.32
FOXA1P55317 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
FOXA1P55317 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
FOXA1P55317 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
FOXA1P55317 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.39■■■□□ 2.3
FOXA1P55317 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
FOXA1P55317 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
FOXA1P55317 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
FOXA1P55317 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
FOXA1P55317 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.13■■■□□ 2.25
FOXA1P55317 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.11■■■□□ 2.25
FOXA1P55317 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
FOXA1P55317 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.07■■■□□ 2.24
FOXA1P55317 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.07■■■□□ 2.24
FOXA1P55317 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
FOXA1P55317 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
FOXA1P55317 ILK-212ENST00000532063 1617 ntTSL 2 BASIC28.94■■■□□ 2.22
FOXA1P55317 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
FOXA1P55317 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.89■■■□□ 2.21
FOXA1P55317 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
FOXA1P55317 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.8■■■□□ 2.2
FOXA1P55317 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
FOXA1P55317 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
FOXA1P55317 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
FOXA1P55317 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
FOXA1P55317 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
FOXA1P55317 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
FOXA1P55317 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC28.64■■■□□ 2.18
FOXA1P55317 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
FOXA1P55317 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
FOXA1P55317 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
FOXA1P55317 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
FOXA1P55317 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
FOXA1P55317 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
FOXA1P55317 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
FOXA1P55317 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
FOXA1P55317 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
FOXA1P55317 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
FOXA1P55317 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
FOXA1P55317 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
FOXA1P55317 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.34■■■□□ 2.13
FOXA1P55317 INO80B-203ENST00000409917 796 ntTSL 2 BASIC28.32■■■□□ 2.12
FOXA1P55317 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
FOXA1P55317 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
FOXA1P55317 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
FOXA1P55317 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
FOXA1P55317 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC28.26■■■□□ 2.11
FOXA1P55317 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
FOXA1P55317 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
FOXA1P55317 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC28.2■■■□□ 2.11
FOXA1P55317 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
FOXA1P55317 AC145285.7-201ENST00000614819 1539 ntBASIC28.19■■■□□ 2.1
FOXA1P55317 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
FOXA1P55317 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
FOXA1P55317 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
FOXA1P55317 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
FOXA1P55317 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
FOXA1P55317 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC28.09■■■□□ 2.09
FOXA1P55317 AC015813.7-201ENST00000623294 581 ntBASIC28.06■■■□□ 2.08
FOXA1P55317 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
FOXA1P55317 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
FOXA1P55317 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
FOXA1P55317 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms