Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.85■■■□□ 2.21
LRRC53A6NM62 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
LRRC53A6NM62 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
LRRC53A6NM62 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
LRRC53A6NM62 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
LRRC53A6NM62 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
LRRC53A6NM62 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
LRRC53A6NM62 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.81■■■□□ 2.2
LRRC53A6NM62 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
LRRC53A6NM62 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
LRRC53A6NM62 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
LRRC53A6NM62 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
LRRC53A6NM62 AL135925.1-201ENST00000605920 1701 ntBASIC28.8■■■□□ 2.2
LRRC53A6NM62 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
LRRC53A6NM62 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
LRRC53A6NM62 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
LRRC53A6NM62 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
LRRC53A6NM62 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.77■■■□□ 2.2
LRRC53A6NM62 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
LRRC53A6NM62 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
LRRC53A6NM62 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.74■■■□□ 2.19
LRRC53A6NM62 WASH5P-204ENST00000632292 975 ntBASIC28.74■■■□□ 2.19
LRRC53A6NM62 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.73■■■□□ 2.19
LRRC53A6NM62 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.73■■■□□ 2.19
LRRC53A6NM62 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.73■■■□□ 2.19
LRRC53A6NM62 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
LRRC53A6NM62 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
LRRC53A6NM62 AL133380.1-201ENST00000506013 324 ntBASIC28.71■■■□□ 2.19
LRRC53A6NM62 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.7■■■□□ 2.19
LRRC53A6NM62 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.7■■■□□ 2.19
LRRC53A6NM62 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.69■■■□□ 2.18
LRRC53A6NM62 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.69■■■□□ 2.18
LRRC53A6NM62 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.69■■■□□ 2.18
LRRC53A6NM62 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.68■■■□□ 2.18
LRRC53A6NM62 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
LRRC53A6NM62 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.67■■■□□ 2.18
LRRC53A6NM62 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.67■■■□□ 2.18
LRRC53A6NM62 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.65■■■□□ 2.18
LRRC53A6NM62 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
LRRC53A6NM62 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
LRRC53A6NM62 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
LRRC53A6NM62 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.61■■■□□ 2.17
LRRC53A6NM62 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
LRRC53A6NM62 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.6■■■□□ 2.17
LRRC53A6NM62 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
LRRC53A6NM62 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
LRRC53A6NM62 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
LRRC53A6NM62 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
LRRC53A6NM62 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
LRRC53A6NM62 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
LRRC53A6NM62 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
LRRC53A6NM62 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
LRRC53A6NM62 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
LRRC53A6NM62 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
LRRC53A6NM62 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
LRRC53A6NM62 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
LRRC53A6NM62 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
LRRC53A6NM62 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.52■■■□□ 2.16
LRRC53A6NM62 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.51■■■□□ 2.15
LRRC53A6NM62 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
LRRC53A6NM62 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
LRRC53A6NM62 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
LRRC53A6NM62 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC28.49■■■□□ 2.15
LRRC53A6NM62 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
LRRC53A6NM62 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
LRRC53A6NM62 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
LRRC53A6NM62 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
LRRC53A6NM62 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
LRRC53A6NM62 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
LRRC53A6NM62 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
LRRC53A6NM62 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
LRRC53A6NM62 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
LRRC53A6NM62 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.45■■■□□ 2.14
LRRC53A6NM62 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
LRRC53A6NM62 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC28.44■■■□□ 2.14
LRRC53A6NM62 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
LRRC53A6NM62 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
LRRC53A6NM62 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
LRRC53A6NM62 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.43■■■□□ 2.14
LRRC53A6NM62 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
LRRC53A6NM62 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
LRRC53A6NM62 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
LRRC53A6NM62 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
LRRC53A6NM62 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.42■■■□□ 2.14
LRRC53A6NM62 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
LRRC53A6NM62 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
LRRC53A6NM62 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
LRRC53A6NM62 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
LRRC53A6NM62 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
LRRC53A6NM62 RARRES2P7-201ENST00000567349 469 ntBASIC28.4■■■□□ 2.14
LRRC53A6NM62 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
LRRC53A6NM62 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
LRRC53A6NM62 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
LRRC53A6NM62 AL139393.2-201ENST00000608721 2025 ntBASIC28.39■■■□□ 2.14
LRRC53A6NM62 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
LRRC53A6NM62 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
LRRC53A6NM62 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
LRRC53A6NM62 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
LRRC53A6NM62 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
LRRC53A6NM62 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms