Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV3A0A0B4J244 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV3A0A0B4J244 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV3A0A0B4J244 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAV3A0A0B4J244 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV3A0A0B4J244 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV3A0A0B4J244 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV3A0A0B4J244 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
TRAV3A0A0B4J244 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
TRAV3A0A0B4J244 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV3A0A0B4J244 AL135925.1-201ENST00000605920 1701 ntBASIC21.44■■□□□ 1.02
TRAV3A0A0B4J244 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV3A0A0B4J244 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV3A0A0B4J244 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
TRAV3A0A0B4J244 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV3A0A0B4J244 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV3A0A0B4J244 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV3A0A0B4J244 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV3A0A0B4J244 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.41■■□□□ 1.02
TRAV3A0A0B4J244 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV3A0A0B4J244 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV3A0A0B4J244 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TRAV3A0A0B4J244 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.4■■□□□ 1.02
TRAV3A0A0B4J244 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.4■■□□□ 1.02
TRAV3A0A0B4J244 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRAV3A0A0B4J244 WASH5P-204ENST00000632292 975 ntBASIC21.39■■□□□ 1.01
TRAV3A0A0B4J244 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.38■■□□□ 1.01
TRAV3A0A0B4J244 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
TRAV3A0A0B4J244 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAV3A0A0B4J244 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TRAV3A0A0B4J244 AL133380.1-201ENST00000506013 324 ntBASIC21.36■■□□□ 1.01
TRAV3A0A0B4J244 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.36■■□□□ 1.01
TRAV3A0A0B4J244 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.35■■□□□ 1.01
TRAV3A0A0B4J244 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV3A0A0B4J244 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.35■■□□□ 1.01
TRAV3A0A0B4J244 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV3A0A0B4J244 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.33■■□□□ 1.01
TRAV3A0A0B4J244 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.33■■□□□ 1.01
TRAV3A0A0B4J244 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV3A0A0B4J244 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAV3A0A0B4J244 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV3A0A0B4J244 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAV3A0A0B4J244 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.3■■□□□ 1
TRAV3A0A0B4J244 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAV3A0A0B4J244 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV3A0A0B4J244 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.28■■□□□ 1
TRAV3A0A0B4J244 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV3A0A0B4J244 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
TRAV3A0A0B4J244 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV3A0A0B4J244 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV3A0A0B4J244 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV3A0A0B4J244 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
TRAV3A0A0B4J244 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV3A0A0B4J244 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
TRAV3A0A0B4J244 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV3A0A0B4J244 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV3A0A0B4J244 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV3A0A0B4J244 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV3A0A0B4J244 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV3A0A0B4J244 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
TRAV3A0A0B4J244 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.23■□□□□ 0.99
TRAV3A0A0B4J244 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV3A0A0B4J244 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV3A0A0B4J244 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
TRAV3A0A0B4J244 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV3A0A0B4J244 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV3A0A0B4J244 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TRAV3A0A0B4J244 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV3A0A0B4J244 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV3A0A0B4J244 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
TRAV3A0A0B4J244 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV3A0A0B4J244 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRAV3A0A0B4J244 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAV3A0A0B4J244 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV3A0A0B4J244 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV3A0A0B4J244 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV3A0A0B4J244 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV3A0A0B4J244 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.17■□□□□ 0.98
TRAV3A0A0B4J244 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV3A0A0B4J244 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV3A0A0B4J244 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV3A0A0B4J244 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.17■□□□□ 0.98
TRAV3A0A0B4J244 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRAV3A0A0B4J244 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV3A0A0B4J244 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
TRAV3A0A0B4J244 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV3A0A0B4J244 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV3A0A0B4J244 RARRES2P7-201ENST00000567349 469 ntBASIC21.16■□□□□ 0.98
TRAV3A0A0B4J244 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRAV3A0A0B4J244 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRAV3A0A0B4J244 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV3A0A0B4J244 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV3A0A0B4J244 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV3A0A0B4J244 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
TRAV3A0A0B4J244 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV3A0A0B4J244 AL139393.2-201ENST00000608721 2025 ntBASIC21.13■□□□□ 0.97
TRAV3A0A0B4J244 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
TRAV3A0A0B4J244 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TRAV3A0A0B4J244 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV3A0A0B4J244 SETD8P1-201ENST00000623146 1180 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms