Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM56-RWDD3S4R434 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM56-RWDD3S4R434 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM56-RWDD3S4R434 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
TMEM56-RWDD3S4R434 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TMEM56-RWDD3S4R434 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TMEM56-RWDD3S4R434 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
TMEM56-RWDD3S4R434 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TMEM56-RWDD3S4R434 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.23■■□□□ 1.15
TMEM56-RWDD3S4R434 MVK-208ENST00000539696 608 ntTSL 5 BASIC22.23■■□□□ 1.15
TMEM56-RWDD3S4R434 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
TMEM56-RWDD3S4R434 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC22.22■■□□□ 1.15
TMEM56-RWDD3S4R434 AC139426.1-201ENST00000568218 2529 ntBASIC22.22■■□□□ 1.15
TMEM56-RWDD3S4R434 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TMEM56-RWDD3S4R434 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.21■■□□□ 1.15
TMEM56-RWDD3S4R434 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TMEM56-RWDD3S4R434 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TMEM56-RWDD3S4R434 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TMEM56-RWDD3S4R434 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
TMEM56-RWDD3S4R434 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TMEM56-RWDD3S4R434 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TMEM56-RWDD3S4R434 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TMEM56-RWDD3S4R434 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TMEM56-RWDD3S4R434 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TMEM56-RWDD3S4R434 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TMEM56-RWDD3S4R434 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
TMEM56-RWDD3S4R434 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
TMEM56-RWDD3S4R434 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TMEM56-RWDD3S4R434 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TMEM56-RWDD3S4R434 ST7-AS1-201ENST00000456775 1889 ntBASIC22.13■■□□□ 1.13
TMEM56-RWDD3S4R434 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TMEM56-RWDD3S4R434 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC22.12■■□□□ 1.13
TMEM56-RWDD3S4R434 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TMEM56-RWDD3S4R434 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TMEM56-RWDD3S4R434 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TMEM56-RWDD3S4R434 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TMEM56-RWDD3S4R434 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.09■■□□□ 1.13
TMEM56-RWDD3S4R434 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TMEM56-RWDD3S4R434 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC22.08■■□□□ 1.13
TMEM56-RWDD3S4R434 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
TMEM56-RWDD3S4R434 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TMEM56-RWDD3S4R434 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TMEM56-RWDD3S4R434 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TMEM56-RWDD3S4R434 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TMEM56-RWDD3S4R434 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.06■■□□□ 1.12
TMEM56-RWDD3S4R434 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
TMEM56-RWDD3S4R434 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
TMEM56-RWDD3S4R434 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC22.04■■□□□ 1.12
TMEM56-RWDD3S4R434 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
TMEM56-RWDD3S4R434 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TMEM56-RWDD3S4R434 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TMEM56-RWDD3S4R434 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TMEM56-RWDD3S4R434 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
TMEM56-RWDD3S4R434 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TMEM56-RWDD3S4R434 AL161658.1-201ENST00000623641 1967 ntBASIC22.01■■□□□ 1.11
TMEM56-RWDD3S4R434 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.01■■□□□ 1.11
TMEM56-RWDD3S4R434 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TMEM56-RWDD3S4R434 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TMEM56-RWDD3S4R434 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
TMEM56-RWDD3S4R434 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TMEM56-RWDD3S4R434 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TMEM56-RWDD3S4R434 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.98■■□□□ 1.11
TMEM56-RWDD3S4R434 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TMEM56-RWDD3S4R434 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.97■■□□□ 1.11
TMEM56-RWDD3S4R434 AC006077.2-201ENST00000623591 457 ntBASIC21.97■■□□□ 1.11
TMEM56-RWDD3S4R434 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TMEM56-RWDD3S4R434 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
TMEM56-RWDD3S4R434 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
TMEM56-RWDD3S4R434 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
TMEM56-RWDD3S4R434 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TMEM56-RWDD3S4R434 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TMEM56-RWDD3S4R434 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM56-RWDD3S4R434 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM56-RWDD3S4R434 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.91■■□□□ 1.1
TMEM56-RWDD3S4R434 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM56-RWDD3S4R434 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM56-RWDD3S4R434 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM56-RWDD3S4R434 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM56-RWDD3S4R434 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM56-RWDD3S4R434 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
TMEM56-RWDD3S4R434 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TMEM56-RWDD3S4R434 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TMEM56-RWDD3S4R434 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TMEM56-RWDD3S4R434 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
TMEM56-RWDD3S4R434 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms