Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.9■□□□□ 0.94
NOTCH3Q9UM47 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NOTCH3Q9UM47 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.9■□□□□ 0.94
NOTCH3Q9UM47 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NOTCH3Q9UM47 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NOTCH3Q9UM47 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
NOTCH3Q9UM47 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.88■□□□□ 0.93
NOTCH3Q9UM47 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.88■□□□□ 0.93
NOTCH3Q9UM47 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
NOTCH3Q9UM47 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.87■□□□□ 0.93
NOTCH3Q9UM47 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC20.86■□□□□ 0.93
NOTCH3Q9UM47 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NOTCH3Q9UM47 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NOTCH3Q9UM47 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NOTCH3Q9UM47 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NOTCH3Q9UM47 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.84■□□□□ 0.93
NOTCH3Q9UM47 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOTCH3Q9UM47 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.84■□□□□ 0.93
NOTCH3Q9UM47 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOTCH3Q9UM47 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.84■□□□□ 0.93
NOTCH3Q9UM47 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOTCH3Q9UM47 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOTCH3Q9UM47 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.83■□□□□ 0.93
NOTCH3Q9UM47 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOTCH3Q9UM47 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOTCH3Q9UM47 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOTCH3Q9UM47 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NOTCH3Q9UM47 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.82■□□□□ 0.92
NOTCH3Q9UM47 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.82■□□□□ 0.92
NOTCH3Q9UM47 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
NOTCH3Q9UM47 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOTCH3Q9UM47 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NOTCH3Q9UM47 MIR4449-201ENST00000578365 66 ntBASIC20.76■□□□□ 0.91
NOTCH3Q9UM47 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NOTCH3Q9UM47 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NOTCH3Q9UM47 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NOTCH3Q9UM47 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NOTCH3Q9UM47 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NOTCH3Q9UM47 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NOTCH3Q9UM47 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC20.73■□□□□ 0.91
NOTCH3Q9UM47 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NOTCH3Q9UM47 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NOTCH3Q9UM47 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NOTCH3Q9UM47 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.7■□□□□ 0.9
NOTCH3Q9UM47 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NOTCH3Q9UM47 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NOTCH3Q9UM47 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.7■□□□□ 0.9
NOTCH3Q9UM47 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NOTCH3Q9UM47 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NOTCH3Q9UM47 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NOTCH3Q9UM47 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NOTCH3Q9UM47 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
NOTCH3Q9UM47 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.68■□□□□ 0.9
NOTCH3Q9UM47 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NOTCH3Q9UM47 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC20.67■□□□□ 0.9
NOTCH3Q9UM47 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NOTCH3Q9UM47 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NOTCH3Q9UM47 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NOTCH3Q9UM47 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC20.67■□□□□ 0.9
NOTCH3Q9UM47 ZNRF2P2-203ENST00000454624 420 ntBASIC20.66■□□□□ 0.9
NOTCH3Q9UM47 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
NOTCH3Q9UM47 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.65■□□□□ 0.9
NOTCH3Q9UM47 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOTCH3Q9UM47 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.63■□□□□ 0.89
NOTCH3Q9UM47 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.63■□□□□ 0.89
NOTCH3Q9UM47 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOTCH3Q9UM47 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOTCH3Q9UM47 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.62■□□□□ 0.89
NOTCH3Q9UM47 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NOTCH3Q9UM47 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.62■□□□□ 0.89
NOTCH3Q9UM47 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 WASH5P-204ENST00000632292 975 ntBASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.61■□□□□ 0.89
NOTCH3Q9UM47 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
NOTCH3Q9UM47 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NOTCH3Q9UM47 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.6■□□□□ 0.89
NOTCH3Q9UM47 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NOTCH3Q9UM47 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOTCH3Q9UM47 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
NOTCH3Q9UM47 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NOTCH3Q9UM47 DUX4L29-201ENST00000425409 679 ntBASIC20.58■□□□□ 0.89
NOTCH3Q9UM47 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
NOTCH3Q9UM47 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.57■□□□□ 0.88
NOTCH3Q9UM47 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NOTCH3Q9UM47 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOTCH3Q9UM47 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NOTCH3Q9UM47 MIR639-201ENST00000384974 98 ntBASIC20.56■□□□□ 0.88
NOTCH3Q9UM47 AC021231.2-201ENST00000594613 730 ntBASIC20.55■□□□□ 0.88
NOTCH3Q9UM47 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC20.55■□□□□ 0.88
NOTCH3Q9UM47 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NOTCH3Q9UM47 MIR3648-2-201ENST00000581792 180 ntBASIC20.54■□□□□ 0.88
NOTCH3Q9UM47 MIR3648-1-201ENST00000615959 180 ntBASIC20.54■□□□□ 0.88
NOTCH3Q9UM47 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.54■□□□□ 0.88
NOTCH3Q9UM47 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOTCH3Q9UM47 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOTCH3Q9UM47 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms