Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.43■■■□□ 2.78
RNF20Q5VTR2 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.43■■■□□ 2.78
RNF20Q5VTR2 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC32.42■■■□□ 2.78
RNF20Q5VTR2 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.42■■■□□ 2.78
RNF20Q5VTR2 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
RNF20Q5VTR2 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.41■■■□□ 2.78
RNF20Q5VTR2 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
RNF20Q5VTR2 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
RNF20Q5VTR2 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC32.4■■■□□ 2.78
RNF20Q5VTR2 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.38■■■□□ 2.77
RNF20Q5VTR2 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
RNF20Q5VTR2 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
RNF20Q5VTR2 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
RNF20Q5VTR2 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.34■■■□□ 2.77
RNF20Q5VTR2 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.33■■■□□ 2.77
RNF20Q5VTR2 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
RNF20Q5VTR2 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
RNF20Q5VTR2 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
RNF20Q5VTR2 AL133380.1-201ENST00000506013 324 ntBASIC32.29■■■□□ 2.76
RNF20Q5VTR2 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
RNF20Q5VTR2 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.27■■■□□ 2.76
RNF20Q5VTR2 RARRES2P7-201ENST00000567349 469 ntBASIC32.27■■■□□ 2.76
RNF20Q5VTR2 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.26■■■□□ 2.76
RNF20Q5VTR2 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.26■■■□□ 2.75
RNF20Q5VTR2 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC32.25■■■□□ 2.75
RNF20Q5VTR2 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
RNF20Q5VTR2 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
RNF20Q5VTR2 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
RNF20Q5VTR2 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.21■■■□□ 2.75
RNF20Q5VTR2 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
RNF20Q5VTR2 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC32.2■■■□□ 2.74
RNF20Q5VTR2 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
RNF20Q5VTR2 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC32.19■■■□□ 2.74
RNF20Q5VTR2 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
RNF20Q5VTR2 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.18■■■□□ 2.74
RNF20Q5VTR2 WASH5P-204ENST00000632292 975 ntBASIC32.17■■■□□ 2.74
RNF20Q5VTR2 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
RNF20Q5VTR2 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.16■■■□□ 2.74
RNF20Q5VTR2 SETD8P1-201ENST00000623146 1180 ntBASIC32.15■■■□□ 2.74
RNF20Q5VTR2 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.14■■■□□ 2.74
RNF20Q5VTR2 AL161658.1-201ENST00000623641 1967 ntBASIC32.14■■■□□ 2.74
RNF20Q5VTR2 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
RNF20Q5VTR2 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
RNF20Q5VTR2 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
RNF20Q5VTR2 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
RNF20Q5VTR2 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.12■■■□□ 2.73
RNF20Q5VTR2 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC32.11■■■□□ 2.73
RNF20Q5VTR2 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
RNF20Q5VTR2 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
RNF20Q5VTR2 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
RNF20Q5VTR2 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
RNF20Q5VTR2 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
RNF20Q5VTR2 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
RNF20Q5VTR2 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.06■■■□□ 2.72
RNF20Q5VTR2 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
RNF20Q5VTR2 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
RNF20Q5VTR2 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
RNF20Q5VTR2 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
RNF20Q5VTR2 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
RNF20Q5VTR2 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
RNF20Q5VTR2 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC32.01■■■□□ 2.71
RNF20Q5VTR2 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC32.01■■■□□ 2.71
RNF20Q5VTR2 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RNF20Q5VTR2 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
RNF20Q5VTR2 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
RNF20Q5VTR2 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
RNF20Q5VTR2 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.97■■■□□ 2.71
RNF20Q5VTR2 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
RNF20Q5VTR2 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
RNF20Q5VTR2 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.93■■■□□ 2.7
RNF20Q5VTR2 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RNF20Q5VTR2 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RNF20Q5VTR2 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.92■■■□□ 2.7
RNF20Q5VTR2 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
RNF20Q5VTR2 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
RNF20Q5VTR2 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.91■■■□□ 2.7
RNF20Q5VTR2 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
RNF20Q5VTR2 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
RNF20Q5VTR2 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
RNF20Q5VTR2 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
RNF20Q5VTR2 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
RNF20Q5VTR2 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.9■■■□□ 2.7
RNF20Q5VTR2 ABCB10P1-201ENST00000614297 2181 ntBASIC31.9■■■□□ 2.7
RNF20Q5VTR2 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
RNF20Q5VTR2 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RNF20Q5VTR2 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
RNF20Q5VTR2 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RNF20Q5VTR2 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RNF20Q5VTR2 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RNF20Q5VTR2 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RNF20Q5VTR2 AC097358.2-201ENST00000607541 1159 ntBASIC31.85■■■□□ 2.69
RNF20Q5VTR2 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.84■■■□□ 2.69
RNF20Q5VTR2 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.84■■■□□ 2.69
RNF20Q5VTR2 AC136428.2-201ENST00000563187 214 ntBASIC31.84■■■□□ 2.69
RNF20Q5VTR2 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.84■■■□□ 2.69
RNF20Q5VTR2 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
RNF20Q5VTR2 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.8■■■□□ 2.68
RNF20Q5VTR2 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
RNF20Q5VTR2 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.79■■■□□ 2.68
RNF20Q5VTR2 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.79■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms