Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGB3O15347 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB3O15347 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
HMGB3O15347 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGB3O15347 ABCB10P3-201ENST00000561950 2166 ntBASIC21.81■■□□□ 1.08
HMGB3O15347 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB3O15347 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB3O15347 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB3O15347 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.78■■□□□ 1.08
HMGB3O15347 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HMGB3O15347 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB3O15347 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB3O15347 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB3O15347 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB3O15347 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGB3O15347 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB3O15347 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB3O15347 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB3O15347 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB3O15347 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB3O15347 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB3O15347 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB3O15347 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB3O15347 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB3O15347 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB3O15347 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB3O15347 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB3O15347 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB3O15347 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB3O15347 AC139426.1-201ENST00000568218 2529 ntBASIC21.71■■□□□ 1.07
HMGB3O15347 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB3O15347 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB3O15347 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB3O15347 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB3O15347 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB3O15347 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB3O15347 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB3O15347 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB3O15347 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB3O15347 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB3O15347 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB3O15347 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HMGB3O15347 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB3O15347 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB3O15347 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB3O15347 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.64■■□□□ 1.06
HMGB3O15347 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
HMGB3O15347 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB3O15347 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
HMGB3O15347 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGB3O15347 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB3O15347 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB3O15347 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB3O15347 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB3O15347 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB3O15347 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB3O15347 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB3O15347 AC120057.4-201ENST00000624722 1615 ntBASIC21.58■■□□□ 1.04
HMGB3O15347 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGB3O15347 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB3O15347 INO80B-203ENST00000409917 796 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB3O15347 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
HMGB3O15347 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB3O15347 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB3O15347 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.55■■□□□ 1.04
HMGB3O15347 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB3O15347 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
HMGB3O15347 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB3O15347 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGB3O15347 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB3O15347 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB3O15347 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB3O15347 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
HMGB3O15347 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB3O15347 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB3O15347 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB3O15347 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGB3O15347 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB3O15347 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
HMGB3O15347 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.49■■□□□ 1.03
HMGB3O15347 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB3O15347 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
HMGB3O15347 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB3O15347 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGB3O15347 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGB3O15347 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB3O15347 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGB3O15347 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB3O15347 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
HMGB3O15347 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
HMGB3O15347 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms