Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
HMGN4O00479 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGN4O00479 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.37■■□□□ 1.65
HMGN4O00479 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
HMGN4O00479 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.36■■□□□ 1.65
HMGN4O00479 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
HMGN4O00479 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC25.35■■□□□ 1.65
HMGN4O00479 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGN4O00479 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.33■■□□□ 1.65
HMGN4O00479 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGN4O00479 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC25.31■■□□□ 1.64
HMGN4O00479 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC25.31■■□□□ 1.64
HMGN4O00479 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.31■■□□□ 1.64
HMGN4O00479 ABCB10P1-201ENST00000614297 2181 ntBASIC25.28■■□□□ 1.64
HMGN4O00479 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGN4O00479 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGN4O00479 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
HMGN4O00479 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGN4O00479 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC25.24■■□□□ 1.63
HMGN4O00479 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.23■■□□□ 1.63
HMGN4O00479 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGN4O00479 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HMGN4O00479 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.23■■□□□ 1.63
HMGN4O00479 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.21■■□□□ 1.63
HMGN4O00479 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HMGN4O00479 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGN4O00479 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGN4O00479 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
HMGN4O00479 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGN4O00479 AL161658.1-201ENST00000623641 1967 ntBASIC25.17■■□□□ 1.62
HMGN4O00479 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGN4O00479 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.17■■□□□ 1.62
HMGN4O00479 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGN4O00479 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGN4O00479 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGN4O00479 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGN4O00479 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGN4O00479 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGN4O00479 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.14■■□□□ 1.62
HMGN4O00479 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
HMGN4O00479 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HMGN4O00479 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HMGN4O00479 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGN4O00479 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
HMGN4O00479 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGN4O00479 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGN4O00479 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
HMGN4O00479 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGN4O00479 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGN4O00479 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGN4O00479 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGN4O00479 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.1■■□□□ 1.61
HMGN4O00479 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.09■■□□□ 1.61
HMGN4O00479 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGN4O00479 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGN4O00479 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGN4O00479 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.08■■□□□ 1.61
HMGN4O00479 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.07■■□□□ 1.6
HMGN4O00479 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGN4O00479 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGN4O00479 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
HMGN4O00479 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGN4O00479 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.04■■□□□ 1.6
HMGN4O00479 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGN4O00479 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
HMGN4O00479 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGN4O00479 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGN4O00479 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.02■■□□□ 1.6
HMGN4O00479 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
HMGN4O00479 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.02■■□□□ 1.6
HMGN4O00479 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HMGN4O00479 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
HMGN4O00479 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.01■■□□□ 1.59
HMGN4O00479 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGN4O00479 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HMGN4O00479 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25■■□□□ 1.59
HMGN4O00479 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGN4O00479 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25■■□□□ 1.59
HMGN4O00479 AL133380.1-201ENST00000506013 324 ntBASIC25■■□□□ 1.59
HMGN4O00479 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGN4O00479 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGN4O00479 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGN4O00479 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HMGN4O00479 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGN4O00479 ABCB10P3-201ENST00000561950 2166 ntBASIC24.98■■□□□ 1.59
HMGN4O00479 ST7-AS1-201ENST00000456775 1889 ntBASIC24.98■■□□□ 1.59
HMGN4O00479 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGN4O00479 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGN4O00479 WASH5P-204ENST00000632292 975 ntBASIC24.97■■□□□ 1.59
HMGN4O00479 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HMGN4O00479 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGN4O00479 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGN4O00479 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
HMGN4O00479 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGN4O00479 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGN4O00479 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGN4O00479 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.93■■□□□ 1.58
HMGN4O00479 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGN4O00479 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.92■■□□□ 1.58
HMGN4O00479 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms