Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31■■■□□ 2.55
NPHP3-ACAD11A0A0J9YXS1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
NPHP3-ACAD11A0A0J9YXS1 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
NPHP3-ACAD11A0A0J9YXS1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.94■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.93■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.93■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
NPHP3-ACAD11A0A0J9YXS1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.88■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.87■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.87■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.84■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.83■■■□□ 2.53
NPHP3-ACAD11A0A0J9YXS1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.82■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.81■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.8■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.77■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.77■■■□□ 2.52
NPHP3-ACAD11A0A0J9YXS1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.76■■■□□ 2.51
NPHP3-ACAD11A0A0J9YXS1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP3-ACAD11A0A0J9YXS1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP3-ACAD11A0A0J9YXS1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
NPHP3-ACAD11A0A0J9YXS1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP3-ACAD11A0A0J9YXS1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
NPHP3-ACAD11A0A0J9YXS1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.7■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.69■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.67■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.67■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.67■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3-ACAD11A0A0J9YXS1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.63■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.59■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP3-ACAD11A0A0J9YXS1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 RARRES2P7-201ENST00000567349 469 ntBASIC30.57■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.56■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.56■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 AC120057.4-201ENST00000624722 1615 ntBASIC30.55■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
NPHP3-ACAD11A0A0J9YXS1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.48■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
NPHP3-ACAD11A0A0J9YXS1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 SETD8P1-201ENST00000623146 1180 ntBASIC30.43■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 AL133380.1-201ENST00000506013 324 ntBASIC30.4■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP3-ACAD11A0A0J9YXS1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3-ACAD11A0A0J9YXS1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.36■■■□□ 2.45
NPHP3-ACAD11A0A0J9YXS1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3-ACAD11A0A0J9YXS1 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.33■■■□□ 2.45
NPHP3-ACAD11A0A0J9YXS1 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.31■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.28■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3-ACAD11A0A0J9YXS1 AC136428.2-201ENST00000563187 214 ntBASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms