Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TRIM39Q9HCM9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TRIM39Q9HCM9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
TRIM39Q9HCM9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TRIM39Q9HCM9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
TRIM39Q9HCM9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.73■■□□□ 1.55
TRIM39Q9HCM9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.72■■□□□ 1.55
TRIM39Q9HCM9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TRIM39Q9HCM9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.72■■□□□ 1.55
TRIM39Q9HCM9 AC142086.6-201ENST00000621154 1765 ntBASIC24.72■■□□□ 1.55
TRIM39Q9HCM9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
TRIM39Q9HCM9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC24.71■■□□□ 1.55
TRIM39Q9HCM9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
TRIM39Q9HCM9 AC022413.1-201ENST00000624602 984 ntBASIC24.71■■□□□ 1.55
TRIM39Q9HCM9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 GPX1-201ENST00000419349 1106 ntBASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 AC126177.7-201ENST00000547904 679 ntBASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 HSD17B1P1-201ENST00000590052 955 ntBASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
TRIM39Q9HCM9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 LINC01003-201ENST00000564834 1764 ntBASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
TRIM39Q9HCM9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
TRIM39Q9HCM9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
TRIM39Q9HCM9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TRIM39Q9HCM9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.67■■□□□ 1.54
TRIM39Q9HCM9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 AC060814.1-201ENST00000554326 538 ntBASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.66■■□□□ 1.54
TRIM39Q9HCM9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TRIM39Q9HCM9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.65■■□□□ 1.54
TRIM39Q9HCM9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TRIM39Q9HCM9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.65■■□□□ 1.54
TRIM39Q9HCM9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC24.64■■□□□ 1.54
TRIM39Q9HCM9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC24.64■■□□□ 1.54
TRIM39Q9HCM9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
TRIM39Q9HCM9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
TRIM39Q9HCM9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
TRIM39Q9HCM9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.62■■□□□ 1.53
TRIM39Q9HCM9 AL359258.2-201ENST00000564063 1566 ntBASIC24.62■■□□□ 1.53
TRIM39Q9HCM9 BX255925.1-201ENST00000566954 1854 ntBASIC24.62■■□□□ 1.53
TRIM39Q9HCM9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
TRIM39Q9HCM9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.61■■□□□ 1.53
TRIM39Q9HCM9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.61■■□□□ 1.53
TRIM39Q9HCM9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.61■■□□□ 1.53
TRIM39Q9HCM9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TRIM39Q9HCM9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TRIM39Q9HCM9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
TRIM39Q9HCM9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TRIM39Q9HCM9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TRIM39Q9HCM9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
TRIM39Q9HCM9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TRIM39Q9HCM9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TRIM39Q9HCM9 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
TRIM39Q9HCM9 RNF126P1-201ENST00000567452 1320 ntBASIC24.58■■□□□ 1.52
TRIM39Q9HCM9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.52
TRIM39Q9HCM9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM39Q9HCM9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TRIM39Q9HCM9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TRIM39Q9HCM9 WHAMMP3-201ENST00000611636 1609 ntBASIC24.56■■□□□ 1.52
TRIM39Q9HCM9 AC092296.2-201ENST00000589470 999 ntBASIC24.55■■□□□ 1.52
TRIM39Q9HCM9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.55■■□□□ 1.52
TRIM39Q9HCM9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
TRIM39Q9HCM9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.54■■□□□ 1.52
TRIM39Q9HCM9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRIM39Q9HCM9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.54■■□□□ 1.52
TRIM39Q9HCM9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
TRIM39Q9HCM9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.54■■□□□ 1.52
TRIM39Q9HCM9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms