RNA–Protein interactions for RNA: ENST00000618562.1

VEGFC-202, Transcript of vascular endothelial growth factor C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VEGFC, Length 2,064 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFC-202ENST00000618562 NISCHQ9Y2I1 1504 aa56.56■■■■■ 6.64
VEGFC-202ENST00000618562 CCDC180Q9P1Z9 1646 aa49.16■■■■■ 5.46
VEGFC-202ENST00000618562 ZCCHC6Q5VYS8 1495 aaKnown RBP47.57■■■■■ 5.21
VEGFC-202ENST00000618562 DCAF1Q9Y4B6 1507 aa46.71■■■■■ 5.07
VEGFC-202ENST00000618562 DCAF8L2P0C7V8 631 aa46.65■■■■■ 5.06
VEGFC-202ENST00000618562 SHROOM4Q9ULL8 1493 aa46.41■■■■■ 5.02
VEGFC-202ENST00000618562 ABCC9O60706 1549 aa46.33■■■■■ 5.01
VEGFC-202ENST00000618562 MYO15BQ96JP2 1530 aa46.04■■■■■ 4.96
VEGFC-202ENST00000618562 NACADO15069 1562 aa45.71■■■■■ 4.91
VEGFC-202ENST00000618562 SCRIBQ14160 1630 aa45.33■■■■■ 4.85
VEGFC-202ENST00000618562 RB1CC1Q8TDY2 1594 aa45.27■■■■■ 4.84
VEGFC-202ENST00000618562 SUPT5HO00267 1087 aaKnown RBP44.74■■■■■ 4.75
VEGFC-202ENST00000618562 UNC13AQ9UPW8 1703 aa44.49■■■■■ 4.71
VEGFC-202ENST00000618562 RSF1Q96T23 1441 aaPredicted RBP44■■■■■ 4.63
VEGFC-202ENST00000618562 CECR2Q9BXF3 1484 aa43.99■■■■■ 4.63
VEGFC-202ENST00000618562 BICRAQ9NZM4 1560 aa43.99■■■■■ 4.63
VEGFC-202ENST00000618562 PABPN1Q86U42 306 aaKnown RBP eCLIP43.76■■■■■ 4.6
VEGFC-202ENST00000618562 MROH2BQ7Z745 1585 aa43.75■■■■■ 4.59
VEGFC-202ENST00000618562 BAZ1AQ9NRL2 1556 aaPredicted RBP43.62■■■■■ 4.57
VEGFC-202ENST00000618562 SMARCA4P51532 1647 aa43.44■■■■■ 4.54
VEGFC-202ENST00000618562 WIZO95785 1651 aa43.43■■■■■ 4.54
VEGFC-202ENST00000618562 CHIC1Q5VXU3 224 aa42.96■■■■■ 4.47
VEGFC-202ENST00000618562 TOP2AP11388 1531 aaKnown RBP42.92■■■■■ 4.46
VEGFC-202ENST00000618562 PEG3Q9GZU2 1588 aa42.87■■■■■ 4.45
VEGFC-202ENST00000618562 ATAD2BQ9ULI0 1458 aa42.65■■■■■ 4.42
VEGFC-202ENST00000618562 EIF4G1Q04637 1599 aaKnown RBP42.6■■■■■ 4.41
VEGFC-202ENST00000618562 SMARCA2P51531 1590 aa42.58■■■■■ 4.41
VEGFC-202ENST00000618562 CCDC88BA6NC98 1476 aa42.51■■■■■ 4.4
VEGFC-202ENST00000618562 BAZ1BQ9UIG0 1483 aaKnown RBP42.41■■■■■ 4.38
VEGFC-202ENST00000618562 NCAPD3P42695 1498 aa42.2■■■■■ 4.35
VEGFC-202ENST00000618562 HMGXB3Q12766 1538 aa42.17■■■■■ 4.34
VEGFC-202ENST00000618562 TRIM41Q8WV44 630 aa42■■■■■ 4.31
VEGFC-202ENST00000618562 CC2D2AQ9P2K1 1620 aa41.92■■■■■ 4.3
VEGFC-202ENST00000618562 ABCC8Q09428 1581 aa41.76■■■■■ 4.28
VEGFC-202ENST00000618562 WRNQ14191 1432 aaPredicted RBP eCLIP41.38■■■■■ 4.22
VEGFC-202ENST00000618562 LOC105371045A0A1W2PR82 267 aa41.38■■■■■ 4.21
VEGFC-202ENST00000618562 CFTRP13569 1480 aa41.36■■■■■ 4.21
VEGFC-202ENST00000618562 FAM9AQ8IZU1 332 aaPredicted RBP41.3■■■■■ 4.2
VEGFC-202ENST00000618562 SYNJ1O43426 1573 aa41.26■■■■■ 4.2
VEGFC-202ENST00000618562 PRDM2Q13029 1718 aa41.19■■■■■ 4.18
VEGFC-202ENST00000618562 CADPSQ9ULU8 1353 aa41.14■■■■■ 4.18
VEGFC-202ENST00000618562 TOP2BQ02880 1626 aa41.03■■■■■ 4.16
VEGFC-202ENST00000618562 SOGA1O94964 1423 aa41.01■■■■■ 4.16
VEGFC-202ENST00000618562 BIVM-ERCC5R4GMW8 1640 aa40.98■■■■■ 4.15
VEGFC-202ENST00000618562 CUX1P39880 1505 aa40.89■■■■■ 4.14
VEGFC-202ENST00000618562 DNAJC5BQ9UF47 199 aa40.89■■■■■ 4.14
VEGFC-202ENST00000618562 RUSC2Q8N2Y8 1516 aa40.87■■■■■ 4.13
VEGFC-202ENST00000618562 EEA1Q15075 1411 aa40.86■■■■■ 4.13
VEGFC-202ENST00000618562 NESP48681 1621 aa40.79■■■■■ 4.12
VEGFC-202ENST00000618562 EHMT2Q96KQ7 1210 aa40.76■■■■■ 4.12
VEGFC-202ENST00000618562 LAMC3Q9Y6N6 1575 aa40.72■■■■■ 4.11
VEGFC-202ENST00000618562 FANCD2Q9BXW9 1451 aa40.72■■■■■ 4.11
VEGFC-202ENST00000618562 CSRNP3Q8WYN3 585 aa40.66■■■■■ 4.1
VEGFC-202ENST00000618562 PCGF6Q9BYE7 350 aa40.52■■■■■ 4.08
VEGFC-202ENST00000618562 HRCP23327 699 aa40.49■■■■■ 4.07
VEGFC-202ENST00000618562 CEP164Q9UPV0 1460 aa40.41■■■■■ 4.06
VEGFC-202ENST00000618562 DNMBPQ6XZF7 1577 aa40.39■■■■■ 4.06
VEGFC-202ENST00000618562 KIF21BO75037 1637 aa40.39■■■■■ 4.06
VEGFC-202ENST00000618562 FGD5Q6ZNL6 1462 aa40.38■■■■■ 4.05
VEGFC-202ENST00000618562 PDS5BQ9NTI5 1447 aa40.38■■■■■ 4.05
VEGFC-202ENST00000618562 GOLGA3Q08378 1498 aa40.36■■■■■ 4.05
VEGFC-202ENST00000618562 TOPBP1Q92547 1522 aa40.32■■■■■ 4.05
VEGFC-202ENST00000618562 KIF21AQ7Z4S6 1674 aa40.29■■■■■ 4.04
VEGFC-202ENST00000618562 TNIKQ9UKE5 1360 aa40.28■■■■■ 4.04
VEGFC-202ENST00000618562 KIF27Q86VH2 1401 aa40.28■■■■■ 4.04
VEGFC-202ENST00000618562 URB2Q14146 1524 aaKnown RBP40.22■■■■■ 4.03
VEGFC-202ENST00000618562 UBTFP17480 764 aaKnown RBP40.17■■■■■ 4.02
VEGFC-202ENST00000618562 CUX2O14529 1486 aa40.16■■■■■ 4.02
VEGFC-202ENST00000618562 POLA1P09884 1462 aaPredicted RBP40.15■■■■■ 4.02
VEGFC-202ENST00000618562 RAPGEF2Q9Y4G8 1499 aa40.15■■■■■ 4.02
VEGFC-202ENST00000618562 TRIM26Q12899 539 aaPredicted RBP40.12■■■■■ 4.01
VEGFC-202ENST00000618562 CEP162Q5TB80 1403 aa40.12■■■■■ 4.01
VEGFC-202ENST00000618562 PRXQ9BXM0 1461 aa40.12■■■■■ 4.01
VEGFC-202ENST00000618562 RAD54L2Q9Y4B4 1467 aa40.05■■■■■ 4
VEGFC-202ENST00000618562 ERICH3Q5RHP9 1530 aa40.05■■■■■ 4
VEGFC-202ENST00000618562 ABCA10Q8WWZ4 1543 aa40■■■■□ 3.99
VEGFC-202ENST00000618562 IGF1RP08069 1367 aa39.94■■■■□ 3.98
VEGFC-202ENST00000618562 WDR97A6NE52 1622 aa39.89■■■■□ 3.98
VEGFC-202ENST00000618562 MRC2Q9UBG0 1479 aa39.87■■■■□ 3.97
VEGFC-202ENST00000618562 CLIP1P30622 1438 aa39.74■■■■□ 3.95
VEGFC-202ENST00000618562 CARMIL1Q5VZK9 1371 aa39.72■■■■□ 3.95
VEGFC-202ENST00000618562 TARBP1Q13395 1621 aaKnown RBP39.71■■■■□ 3.95
VEGFC-202ENST00000618562 ABCA5Q8WWZ7 1642 aa39.69■■■■□ 3.94
VEGFC-202ENST00000618562 WDR62O43379 1518 aa39.68■■■■□ 3.94
VEGFC-202ENST00000618562 ERCC6Q03468 1493 aa39.64■■■■□ 3.94
VEGFC-202ENST00000618562 TDRD9Q8NDG6 1382 aaKnown RBP39.62■■■■□ 3.93
VEGFC-202ENST00000618562 CUL7Q14999 1698 aa39.58■■■■□ 3.93
VEGFC-202ENST00000618562 GAPVD1Q14C86 1478 aa39.56■■■■□ 3.92
VEGFC-202ENST00000618562 THOC2Q8NI27 1593 aaKnown RBP39.53■■■■□ 3.92
VEGFC-202ENST00000618562 RANGAP1P46060 587 aaPredicted RBP39.51■■■■□ 3.92
VEGFC-202ENST00000618562 PPARGC1BQ86YN6 1023 aaKnown RBP39.44■■■■□ 3.9
VEGFC-202ENST00000618562 VPS8Q8N3P4 1428 aa39.42■■■■□ 3.9
VEGFC-202ENST00000618562 IFT140Q96RY7 1462 aa39.41■■■■□ 3.9
VEGFC-202ENST00000618562 PBRM1Q86U86 1689 aa39.36■■■■□ 3.89
VEGFC-202ENST00000618562 ARAP1Q96P48 1450 aa39.36■■■■□ 3.89
VEGFC-202ENST00000618562 AQRO60306 1485 aaKnown RBP eCLIP39.33■■■■□ 3.89
VEGFC-202ENST00000618562 ARHGAP35Q9NRY4 1499 aa39.29■■■■□ 3.88
VEGFC-202ENST00000618562 ZNF608Q9ULD9 1512 aaPredicted RBP39.28■■■■□ 3.88
VEGFC-202ENST00000618562 CTTNBP2Q8WZ74 1663 aa39.23■■■■□ 3.87
VEGFC-202ENST00000618562 ZEB1P37275 1124 aaPredicted RBP39.23■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms