Protein–RNA interactions for Protein: A0A075B6T8

TRAV9-1, T-cell receptor alpha variable 9-1 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV9-1A0A075B6T8 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
TRAV9-1A0A075B6T8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
TRAV9-1A0A075B6T8 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.51■■□□□ 1.67
TRAV9-1A0A075B6T8 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
TRAV9-1A0A075B6T8 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRAV9-1A0A075B6T8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TRAV9-1A0A075B6T8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
TRAV9-1A0A075B6T8 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC24.78■■□□□ 1.56
TRAV9-1A0A075B6T8 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TRAV9-1A0A075B6T8 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.55■■□□□ 1.52
TRAV9-1A0A075B6T8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TRAV9-1A0A075B6T8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
TRAV9-1A0A075B6T8 HES6-203ENST00000409160 1600 ntTSL 2 BASIC24.49■■□□□ 1.51
TRAV9-1A0A075B6T8 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.12■■□□□ 1.45
TRAV9-1A0A075B6T8 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC24.11■■□□□ 1.45
TRAV9-1A0A075B6T8 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
TRAV9-1A0A075B6T8 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TRAV9-1A0A075B6T8 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
TRAV9-1A0A075B6T8 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
TRAV9-1A0A075B6T8 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC23.77■■□□□ 1.4
TRAV9-1A0A075B6T8 AL356512.1-201ENST00000607453 1739 ntBASIC23.73■■□□□ 1.39
TRAV9-1A0A075B6T8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRAV9-1A0A075B6T8 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRAV9-1A0A075B6T8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.65■■□□□ 1.38
TRAV9-1A0A075B6T8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRAV9-1A0A075B6T8 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TRAV9-1A0A075B6T8 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRAV9-1A0A075B6T8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
TRAV9-1A0A075B6T8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAV9-1A0A075B6T8 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
TRAV9-1A0A075B6T8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAV9-1A0A075B6T8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRAV9-1A0A075B6T8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV9-1A0A075B6T8 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV9-1A0A075B6T8 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRAV9-1A0A075B6T8 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRAV9-1A0A075B6T8 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
TRAV9-1A0A075B6T8 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
TRAV9-1A0A075B6T8 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TRAV9-1A0A075B6T8 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRAV9-1A0A075B6T8 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
TRAV9-1A0A075B6T8 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
TRAV9-1A0A075B6T8 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
TRAV9-1A0A075B6T8 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRAV9-1A0A075B6T8 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRAV9-1A0A075B6T8 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
TRAV9-1A0A075B6T8 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
TRAV9-1A0A075B6T8 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC22.92■■□□□ 1.26
TRAV9-1A0A075B6T8 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
TRAV9-1A0A075B6T8 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TRAV9-1A0A075B6T8 ST7-202ENST00000323984 2142 ntTSL 5 BASIC22.79■■□□□ 1.24
TRAV9-1A0A075B6T8 ST7-205ENST00000393446 2114 ntTSL 5 BASIC22.79■■□□□ 1.24
TRAV9-1A0A075B6T8 ST7-207ENST00000393449 2127 ntTSL 5 BASIC22.79■■□□□ 1.24
TRAV9-1A0A075B6T8 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TRAV9-1A0A075B6T8 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
TRAV9-1A0A075B6T8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
TRAV9-1A0A075B6T8 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
TRAV9-1A0A075B6T8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC22.65■■□□□ 1.22
TRAV9-1A0A075B6T8 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
TRAV9-1A0A075B6T8 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRAV9-1A0A075B6T8 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV9-1A0A075B6T8 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC22.57■■□□□ 1.2
TRAV9-1A0A075B6T8 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC22.56■■□□□ 1.2
TRAV9-1A0A075B6T8 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAV9-1A0A075B6T8 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC22.52■■□□□ 1.2
TRAV9-1A0A075B6T8 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRAV9-1A0A075B6T8 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
TRAV9-1A0A075B6T8 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC22.49■■□□□ 1.19
TRAV9-1A0A075B6T8 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRAV9-1A0A075B6T8 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC22.39■■□□□ 1.17
TRAV9-1A0A075B6T8 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRAV9-1A0A075B6T8 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC22.34■■□□□ 1.17
TRAV9-1A0A075B6T8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV9-1A0A075B6T8 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC22.33■■□□□ 1.17
TRAV9-1A0A075B6T8 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV9-1A0A075B6T8 ILK-212ENST00000532063 1617 ntTSL 2 BASIC22.3■■□□□ 1.16
TRAV9-1A0A075B6T8 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV9-1A0A075B6T8 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAV9-1A0A075B6T8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
TRAV9-1A0A075B6T8 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
TRAV9-1A0A075B6T8 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAV9-1A0A075B6T8 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV9-1A0A075B6T8 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV9-1A0A075B6T8 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV9-1A0A075B6T8 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC22.2■■□□□ 1.14
TRAV9-1A0A075B6T8 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV9-1A0A075B6T8 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
TRAV9-1A0A075B6T8 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV9-1A0A075B6T8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV9-1A0A075B6T8 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV9-1A0A075B6T8 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV9-1A0A075B6T8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV9-1A0A075B6T8 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.14■■□□□ 1.14
TRAV9-1A0A075B6T8 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV9-1A0A075B6T8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV9-1A0A075B6T8 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
TRAV9-1A0A075B6T8 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV9-1A0A075B6T8 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV9-1A0A075B6T8 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV9-1A0A075B6T8 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms