RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 NISCHQ9Y2I1 1504 aa69.95■■■■■ 8.79
CCM2-219ENST00000544363 CCDC180Q9P1Z9 1646 aa61.21■■■■■ 7.39
CCM2-219ENST00000544363 ZCCHC6Q5VYS8 1495 aaKnown RBP58.67■■■■■ 6.98
CCM2-219ENST00000544363 ABCC9O60706 1549 aa58.19■■■■■ 6.91
CCM2-219ENST00000544363 DCAF1Q9Y4B6 1507 aa57.88■■■■■ 6.86
CCM2-219ENST00000544363 DCAF8L2P0C7V8 631 aa57.83■■■■■ 6.85
CCM2-219ENST00000544363 MYO15BQ96JP2 1530 aa57.37■■■■■ 6.77
CCM2-219ENST00000544363 NACADO15069 1562 aa57.11■■■■■ 6.73
CCM2-219ENST00000544363 RB1CC1Q8TDY2 1594 aa56.71■■■■■ 6.67
CCM2-219ENST00000544363 SHROOM4Q9ULL8 1493 aa56.67■■■■■ 6.66
CCM2-219ENST00000544363 SCRIBQ14160 1630 aa56.16■■■■■ 6.58
CCM2-219ENST00000544363 UNC13AQ9UPW8 1703 aa55.51■■■■■ 6.48
CCM2-219ENST00000544363 BICRAQ9NZM4 1560 aa54.99■■■■■ 6.39
CCM2-219ENST00000544363 PABPN1Q86U42 306 aaKnown RBP eCLIP54.79■■■■■ 6.36
CCM2-219ENST00000544363 CECR2Q9BXF3 1484 aa54.35■■■■■ 6.29
CCM2-219ENST00000544363 SUPT5HO00267 1087 aaKnown RBP54.34■■■■■ 6.29
CCM2-219ENST00000544363 RSF1Q96T23 1441 aaPredicted RBP54.09■■■■■ 6.25
CCM2-219ENST00000544363 BAZ1AQ9NRL2 1556 aaPredicted RBP54.05■■■■■ 6.24
CCM2-219ENST00000544363 MROH2BQ7Z745 1585 aa54■■■■■ 6.23
CCM2-219ENST00000544363 SMARCA4P51532 1647 aa53.85■■■■■ 6.21
CCM2-219ENST00000544363 WIZO95785 1651 aa53.52■■■■■ 6.16
CCM2-219ENST00000544363 EIF4G1Q04637 1599 aaKnown RBP53.37■■■■■ 6.13
CCM2-219ENST00000544363 PEG3Q9GZU2 1588 aa53.24■■■■■ 6.11
CCM2-219ENST00000544363 ATAD2BQ9ULI0 1458 aa53.08■■■■■ 6.09
CCM2-219ENST00000544363 SMARCA2P51531 1590 aa53.06■■■■■ 6.08
CCM2-219ENST00000544363 TOP2AP11388 1531 aaKnown RBP52.99■■■■■ 6.07
CCM2-219ENST00000544363 BAZ1BQ9UIG0 1483 aaKnown RBP52.75■■■■■ 6.03
CCM2-219ENST00000544363 NCAPD3P42695 1498 aa52.72■■■■■ 6.03
CCM2-219ENST00000544363 CC2D2AQ9P2K1 1620 aa52.67■■■■■ 6.02
CCM2-219ENST00000544363 HMGXB3Q12766 1538 aa52.6■■■■■ 6.01
CCM2-219ENST00000544363 CCDC88BA6NC98 1476 aa52.43■■■■■ 5.98
CCM2-219ENST00000544363 CHIC1Q5VXU3 224 aa51.84■■■■■ 5.89
CCM2-219ENST00000544363 DNAJC5BQ9UF47 199 aa51.7■■■■■ 5.87
CCM2-219ENST00000544363 CFTRP13569 1480 aa51.42■■■■■ 5.82
CCM2-219ENST00000544363 CADPSQ9ULU8 1353 aa51.33■■■■■ 5.81
CCM2-219ENST00000544363 TRIM41Q8WV44 630 aa51.16■■■■■ 5.78
CCM2-219ENST00000544363 ABCC8Q09428 1581 aa51.16■■■■■ 5.78
CCM2-219ENST00000544363 PRDM2Q13029 1718 aa51.12■■■■■ 5.77
CCM2-219ENST00000544363 LAMC3Q9Y6N6 1575 aa50.98■■■■■ 5.75
CCM2-219ENST00000544363 NESP48681 1621 aa50.96■■■■■ 5.75
CCM2-219ENST00000544363 WRNQ14191 1432 aaPredicted RBP eCLIP50.93■■■■■ 5.74
CCM2-219ENST00000544363 FANCD2Q9BXW9 1451 aa50.74■■■■■ 5.71
CCM2-219ENST00000544363 SYNJ1O43426 1573 aa50.71■■■■■ 5.71
CCM2-219ENST00000544363 PDS5BQ9NTI5 1447 aa50.62■■■■■ 5.69
CCM2-219ENST00000544363 TOP2BQ02880 1626 aa50.57■■■■■ 5.69
CCM2-219ENST00000544363 CUX1P39880 1505 aa50.52■■■■■ 5.68
CCM2-219ENST00000544363 BIVM-ERCC5R4GMW8 1640 aa50.52■■■■■ 5.68
CCM2-219ENST00000544363 CEP164Q9UPV0 1460 aa50.47■■■■■ 5.67
CCM2-219ENST00000544363 KIF21AQ7Z4S6 1674 aa50.35■■■■■ 5.65
CCM2-219ENST00000544363 DNMBPQ6XZF7 1577 aa50.22■■■■■ 5.63
CCM2-219ENST00000544363 FAM9AQ8IZU1 332 aaPredicted RBP50.16■■■■■ 5.62
CCM2-219ENST00000544363 TOPBP1Q92547 1522 aa50.15■■■■■ 5.62
CCM2-219ENST00000544363 SOGA1O94964 1423 aa50.12■■■■■ 5.61
CCM2-219ENST00000544363 URB2Q14146 1524 aaKnown RBP50.12■■■■■ 5.61
CCM2-219ENST00000544363 FGD5Q6ZNL6 1462 aa50.03■■■■■ 5.6
CCM2-219ENST00000544363 EEA1Q15075 1411 aa50.01■■■■■ 5.6
CCM2-219ENST00000544363 MRC2Q9UBG0 1479 aa49.97■■■■■ 5.59
CCM2-219ENST00000544363 ERCC6Q03468 1493 aa49.96■■■■■ 5.59
CCM2-219ENST00000544363 RUSC2Q8N2Y8 1516 aa49.95■■■■■ 5.59
CCM2-219ENST00000544363 POLA1P09884 1462 aaPredicted RBP49.87■■■■■ 5.57
CCM2-219ENST00000544363 LOC105371045A0A1W2PR82 267 aa49.8■■■■■ 5.56
CCM2-219ENST00000544363 CSRNP3Q8WYN3 585 aa49.76■■■■■ 5.56
CCM2-219ENST00000544363 WDR62O43379 1518 aa49.72■■■■■ 5.55
CCM2-219ENST00000544363 KIF27Q86VH2 1401 aa49.69■■■■■ 5.54
CCM2-219ENST00000544363 RAD54L2Q9Y4B4 1467 aa49.68■■■■■ 5.54
CCM2-219ENST00000544363 THOC2Q8NI27 1593 aaKnown RBP49.65■■■■■ 5.54
CCM2-219ENST00000544363 CUX2O14529 1486 aa49.64■■■■■ 5.54
CCM2-219ENST00000544363 ABCA10Q8WWZ4 1543 aa49.61■■■■■ 5.53
CCM2-219ENST00000544363 WDR97A6NE52 1622 aa49.47■■■■■ 5.51
CCM2-219ENST00000544363 TARBP1Q13395 1621 aaKnown RBP49.43■■■■■ 5.5
CCM2-219ENST00000544363 EHMT2Q96KQ7 1210 aa49.42■■■■■ 5.5
CCM2-219ENST00000544363 KIF21BO75037 1637 aa49.35■■■■■ 5.49
CCM2-219ENST00000544363 IFT140Q96RY7 1462 aa49.31■■■■■ 5.48
CCM2-219ENST00000544363 IGF1RP08069 1367 aa49.29■■■■■ 5.48
CCM2-219ENST00000544363 GOLGA3Q08378 1498 aa49.27■■■■■ 5.48
CCM2-219ENST00000544363 PRXQ9BXM0 1461 aa49.25■■■■■ 5.48
CCM2-219ENST00000544363 TDRD9Q8NDG6 1382 aaKnown RBP49.24■■■■■ 5.47
CCM2-219ENST00000544363 ABCA5Q8WWZ7 1642 aa49.23■■■■■ 5.47
CCM2-219ENST00000544363 GAPVD1Q14C86 1478 aa49.16■■■■■ 5.46
CCM2-219ENST00000544363 RAPGEF2Q9Y4G8 1499 aa49.13■■■■■ 5.46
CCM2-219ENST00000544363 ERICH3Q5RHP9 1530 aa49.12■■■■■ 5.45
CCM2-219ENST00000544363 UBTFP17480 764 aaKnown RBP49.05■■■■■ 5.44
CCM2-219ENST00000544363 TNIKQ9UKE5 1360 aa49.05■■■■■ 5.44
CCM2-219ENST00000544363 CARMIL1Q5VZK9 1371 aa49.04■■■■■ 5.44
CCM2-219ENST00000544363 ZNF608Q9ULD9 1512 aaPredicted RBP49■■■■■ 5.44
CCM2-219ENST00000544363 AQRO60306 1485 aaKnown RBP eCLIP49■■■■■ 5.437e-7■■■■■ 33.7
CCM2-219ENST00000544363 CUL7Q14999 1698 aa48.95■■■■■ 5.43
CCM2-219ENST00000544363 PBRM1Q86U86 1689 aa48.88■■■■■ 5.42
CCM2-219ENST00000544363 GRIN2BQ13224 1484 aa48.85■■■■■ 5.41
CCM2-219ENST00000544363 EIF4G3O43432 1585 aaKnown RBP48.83■■■■■ 5.41
CCM2-219ENST00000544363 CEP162Q5TB80 1403 aa48.72■■■■■ 5.39
CCM2-219ENST00000544363 FHAD1B1AJZ9 1412 aa48.64■■■■■ 5.38
CCM2-219ENST00000544363 ADAMTS12P58397 1594 aa48.62■■■■■ 5.37
CCM2-219ENST00000544363 SNAPC4Q5SXM2 1469 aa48.55■■■■■ 5.36
CCM2-219ENST00000544363 MAGI1Q96QZ7 1491 aaPredicted RBP48.49■■■■■ 5.35
CCM2-219ENST00000544363 CLIP1P30622 1438 aa48.45■■■■■ 5.35
CCM2-219ENST00000544363 CTTNBP2Q8WZ74 1663 aa48.32■■■■■ 5.33
CCM2-219ENST00000544363 RANGAP1P46060 587 aaPredicted RBP48.32■■■■■ 5.33
CCM2-219ENST00000544363 SYNJ2O15056 1496 aa48.3■■■■■ 5.32
CCM2-219ENST00000544363 GRIN2AQ12879 1464 aa48.24■■■■■ 5.31
Retrieved 100 of 20,778 RNA–protein pairs in 271.5 ms