Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CKS1BP61024 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CKS1BP61024 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC17.81■□□□□ 0.44
CKS1BP61024 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 DYNLL1-208ENST00000550178 581 ntBASIC17.81■□□□□ 0.44
CKS1BP61024 ST7-AS1-201ENST00000456775 1889 ntBASIC17.81■□□□□ 0.44
CKS1BP61024 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CKS1BP61024 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CKS1BP61024 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CKS1BP61024 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CKS1BP61024 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CKS1BP61024 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CKS1BP61024 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CKS1BP61024 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS1BP61024 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS1BP61024 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS1BP61024 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CKS1BP61024 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CKS1BP61024 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CKS1BP61024 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CKS1BP61024 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CKS1BP61024 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC17.76■□□□□ 0.43
CKS1BP61024 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CKS1BP61024 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CKS1BP61024 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC17.74■□□□□ 0.43
CKS1BP61024 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC17.74■□□□□ 0.43
CKS1BP61024 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CKS1BP61024 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CKS1BP61024 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC17.73■□□□□ 0.43
CKS1BP61024 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
CKS1BP61024 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC17.72■□□□□ 0.43
CKS1BP61024 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CKS1BP61024 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CKS1BP61024 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.7■□□□□ 0.42
CKS1BP61024 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
CKS1BP61024 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CKS1BP61024 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CKS1BP61024 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.67■□□□□ 0.42
CKS1BP61024 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CKS1BP61024 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CKS1BP61024 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC17.66■□□□□ 0.42
CKS1BP61024 AL031258.1-201ENST00000623562 325 ntBASIC17.66■□□□□ 0.42
CKS1BP61024 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.66■□□□□ 0.42
CKS1BP61024 AL135925.1-201ENST00000605920 1701 ntBASIC17.66■□□□□ 0.42
CKS1BP61024 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CKS1BP61024 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CKS1BP61024 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
CKS1BP61024 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC17.64■□□□□ 0.41
CKS1BP61024 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CKS1BP61024 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CKS1BP61024 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms