RNA–Protein interactions for RNA: ENST00000394180.6

CLDND1-202, Transcript of claudin domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDND1, Length 2,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-202ENST00000394180 NISCHQ9Y2I1 1504 aa45.01■■■■■ 4.8
CLDND1-202ENST00000394180 CCDC180Q9P1Z9 1646 aa39.31■■■■□ 3.88
CLDND1-202ENST00000394180 ABCC9O60706 1549 aa37.72■■■■□ 3.63
CLDND1-202ENST00000394180 ZCCHC6Q5VYS8 1495 aaKnown RBP37.72■■■■□ 3.63
CLDND1-202ENST00000394180 DCAF8L2P0C7V8 631 aa37.51■■■■□ 3.59
CLDND1-202ENST00000394180 DCAF1Q9Y4B6 1507 aa37.1■■■■□ 3.53
CLDND1-202ENST00000394180 HRCP23327 699 aa36.81■■■■□ 3.48
CLDND1-202ENST00000394180 MYO15BQ96JP2 1530 aa36.78■■■■□ 3.48
CLDND1-202ENST00000394180 NACADO15069 1562 aa36.73■■■■□ 3.47
CLDND1-202ENST00000394180 SHROOM4Q9ULL8 1493 aa36.66■■■■□ 3.46
CLDND1-202ENST00000394180 PELP1Q8IZL8 1130 aaKnown RBP36.66■■■■□ 3.46
CLDND1-202ENST00000394180 RB1CC1Q8TDY2 1594 aa36.53■■■■□ 3.44
CLDND1-202ENST00000394180 SCRIBQ14160 1630 aa36.27■■■■□ 3.4
CLDND1-202ENST00000394180 UNC13AQ9UPW8 1703 aa35.84■■■■□ 3.33
CLDND1-202ENST00000394180 MYT1Q01538 1121 aa35.6■■■■□ 3.29
CLDND1-202ENST00000394180 PABPN1Q86U42 306 aaKnown RBP eCLIP35.57■■■■□ 3.29
CLDND1-202ENST00000394180 BICRAQ9NZM4 1560 aa35.51■■■■□ 3.27
CLDND1-202ENST00000394180 PCGF6Q9BYE7 350 aa35.38■■■■□ 3.26
CLDND1-202ENST00000394180 PPARGC1BQ86YN6 1023 aaKnown RBP35.31■■■■□ 3.24
CLDND1-202ENST00000394180 CECR2Q9BXF3 1484 aa35.1■■■■□ 3.21
CLDND1-202ENST00000394180 SUPT5HO00267 1087 aaKnown RBP35.07■■■■□ 3.2
CLDND1-202ENST00000394180 CHIC1Q5VXU3 224 aa35.06■■■■□ 3.2
CLDND1-202ENST00000394180 ZEB1P37275 1124 aaPredicted RBP34.87■■■■□ 3.17
CLDND1-202ENST00000394180 MROH2BQ7Z745 1585 aa34.82■■■■□ 3.16
CLDND1-202ENST00000394180 RSF1Q96T23 1441 aaPredicted RBP34.82■■■■□ 3.16
CLDND1-202ENST00000394180 SCAF1Q9H7N4 1312 aaKnown RBP34.75■■■■□ 3.15
CLDND1-202ENST00000394180 BAZ1AQ9NRL2 1556 aaPredicted RBP34.75■■■■□ 3.15
CLDND1-202ENST00000394180 TRIM26Q12899 539 aaPredicted RBP34.67■■■■□ 3.14
CLDND1-202ENST00000394180 SMARCA4P51532 1647 aa34.67■■■■□ 3.14
CLDND1-202ENST00000394180 WIZO95785 1651 aa34.52■■■■□ 3.12
CLDND1-202ENST00000394180 EIF4G1Q04637 1599 aaKnown RBP34.46■■■■□ 3.11
CLDND1-202ENST00000394180 ATAD2BQ9ULI0 1458 aa34.22■■■■□ 3.07
CLDND1-202ENST00000394180 PEG3Q9GZU2 1588 aa34.2■■■■□ 3.07
CLDND1-202ENST00000394180 SMARCA2P51531 1590 aa34.12■■■■□ 3.05
CLDND1-202ENST00000394180 CC2D2AQ9P2K1 1620 aa34.06■■■■□ 3.04
CLDND1-202ENST00000394180 TOP2AP11388 1531 aaKnown RBP34.06■■■■□ 3.04
CLDND1-202ENST00000394180 ACIN1Q9UKV3 1341 aaKnown RBP34.04■■■■□ 3.04
CLDND1-202ENST00000394180 BAZ1BQ9UIG0 1483 aaKnown RBP34■■■■□ 3.03
CLDND1-202ENST00000394180 NCAPD3P42695 1498 aa33.95■■■■□ 3.02
CLDND1-202ENST00000394180 HMGXB3Q12766 1538 aa33.83■■■■□ 3.01
CLDND1-202ENST00000394180 LOC105371045A0A1W2PR82 267 aa33.82■■■■□ 3
CLDND1-202ENST00000394180 CCDC88BA6NC98 1476 aa33.78■■■■□ 3
CLDND1-202ENST00000394180 DNAJC5BQ9UF47 199 aa33.7■■■□□ 2.99
CLDND1-202ENST00000394180 CENPBP07199 599 aaPredicted RBP33.69■■■□□ 2.98
CLDND1-202ENST00000394180 TTBK1Q5TCY1 1321 aaPredicted RBP33.66■■■□□ 2.98
CLDND1-202ENST00000394180 NEUROD1Q13562 356 aa33.64■■■□□ 2.98
CLDND1-202ENST00000394180 GTF3C3Q9Y5Q9 886 aa33.52■■■□□ 2.96
CLDND1-202ENST00000394180 DIEXFQ68CQ4 756 aaKnown RBP33.12■■■□□ 2.89
CLDND1-202ENST00000394180 CFTRP13569 1480 aa33.11■■■□□ 2.89
CLDND1-202ENST00000394180 CADPSQ9ULU8 1353 aa33.09■■■□□ 2.89
CLDND1-202ENST00000394180 NESP48681 1621 aa33.02■■■□□ 2.88
CLDND1-202ENST00000394180 ABCC8Q09428 1581 aa33.01■■■□□ 2.87
CLDND1-202ENST00000394180 TRIM41Q8WV44 630 aa32.92■■■□□ 2.86
CLDND1-202ENST00000394180 LAMC3Q9Y6N6 1575 aa32.83■■■□□ 2.85
CLDND1-202ENST00000394180 PRDM2Q13029 1718 aa32.82■■■□□ 2.85
CLDND1-202ENST00000394180 CCER1Q8TC90 406 aaPredicted RBP32.78■■■□□ 2.84
CLDND1-202ENST00000394180 WRNQ14191 1432 aaPredicted RBP eCLIP32.77■■■□□ 2.84
CLDND1-202ENST00000394180 FANCD2Q9BXW9 1451 aa32.74■■■□□ 2.83
CLDND1-202ENST00000394180 CLSPNQ9HAW4 1339 aa32.72■■■□□ 2.83
CLDND1-202ENST00000394180 SYNJ1O43426 1573 aa32.67■■■□□ 2.82
CLDND1-202ENST00000394180 PDS5BQ9NTI5 1447 aa32.62■■■□□ 2.81
CLDND1-202ENST00000394180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.61■■■□□ 2.81
CLDND1-202ENST00000394180 CUX1P39880 1505 aa32.56■■■□□ 2.8
CLDND1-202ENST00000394180 ZNF316A6NFI3 1004 aaPredicted RBP32.55■■■□□ 2.8
CLDND1-202ENST00000394180 CEP164Q9UPV0 1460 aa32.54■■■□□ 2.8
CLDND1-202ENST00000394180 KIF21AQ7Z4S6 1674 aa32.54■■■□□ 2.8
CLDND1-202ENST00000394180 TOP2BQ02880 1626 aa32.5■■■□□ 2.79
CLDND1-202ENST00000394180 BIVM-ERCC5R4GMW8 1640 aa32.44■■■□□ 2.78
CLDND1-202ENST00000394180 FAM9AQ8IZU1 332 aaPredicted RBP32.43■■■□□ 2.78
CLDND1-202ENST00000394180 ANP32EQ9BTT0 268 aa32.37■■■□□ 2.77
CLDND1-202ENST00000394180 URB2Q14146 1524 aaKnown RBP32.37■■■□□ 2.77
CLDND1-202ENST00000394180 BCL11AQ9H165 835 aa32.36■■■□□ 2.77
CLDND1-202ENST00000394180 ERCC6Q03468 1493 aa32.34■■■□□ 2.77
CLDND1-202ENST00000394180 TOPBP1Q92547 1522 aa32.33■■■□□ 2.77
CLDND1-202ENST00000394180 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.76
CLDND1-202ENST00000394180 SOGA1O94964 1423 aa32.32■■■□□ 2.76
CLDND1-202ENST00000394180 FGD5Q6ZNL6 1462 aa32.27■■■□□ 2.76
CLDND1-202ENST00000394180 RUSC2Q8N2Y8 1516 aa32.24■■■□□ 2.75
CLDND1-202ENST00000394180 MRC2Q9UBG0 1479 aa32.22■■■□□ 2.75
CLDND1-202ENST00000394180 POLA1P09884 1462 aaPredicted RBP32.17■■■□□ 2.74
CLDND1-202ENST00000394180 RAD54L2Q9Y4B4 1467 aa32.12■■■□□ 2.73
CLDND1-202ENST00000394180 MIER1Q8N108 512 aa32.09■■■□□ 2.73
CLDND1-202ENST00000394180 YTHDC1Q96MU7 727 aaKnown RBP32.09■■■□□ 2.73
CLDND1-202ENST00000394180 EHMT2Q96KQ7 1210 aa32.08■■■□□ 2.73
CLDND1-202ENST00000394180 THOC2Q8NI27 1593 aaKnown RBP32.07■■■□□ 2.72
CLDND1-202ENST00000394180 WDR62O43379 1518 aa32.06■■■□□ 2.72
CLDND1-202ENST00000394180 CUX2O14529 1486 aa31.99■■■□□ 2.71
CLDND1-202ENST00000394180 CSRNP3Q8WYN3 585 aa31.99■■■□□ 2.71
CLDND1-202ENST00000394180 EEA1Q15075 1411 aa31.98■■■□□ 2.71
CLDND1-202ENST00000394180 SUPT16HQ9Y5B9 1047 aaKnown RBP31.97■■■□□ 2.71
CLDND1-202ENST00000394180 KIF27Q86VH2 1401 aa31.95■■■□□ 2.7
CLDND1-202ENST00000394180 TSHZ2Q9NRE2 1034 aa31.94■■■□□ 2.7
CLDND1-202ENST00000394180 ABCA10Q8WWZ4 1543 aa31.92■■■□□ 2.7
CLDND1-202ENST00000394180 TARBP1Q13395 1621 aaKnown RBP31.86■■■□□ 2.69
CLDND1-202ENST00000394180 TDRD9Q8NDG6 1382 aaKnown RBP31.85■■■□□ 2.69
CLDND1-202ENST00000394180 WDR97A6NE52 1622 aa31.83■■■□□ 2.69
CLDND1-202ENST00000394180 IFT140Q96RY7 1462 aa31.76■■■□□ 2.67
CLDND1-202ENST00000394180 IGF1RP08069 1367 aa31.75■■■□□ 2.67
CLDND1-202ENST00000394180 ZNF608Q9ULD9 1512 aaPredicted RBP31.72■■■□□ 2.67
CLDND1-202ENST00000394180 AQRO60306 1485 aaKnown RBP eCLIP31.71■■■□□ 2.671e-6■■■■□ 26.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms