RNA–Protein interactions for RNA: ENST00000394081.7

RARA-202, Transcript of retinoic acid receptor alpha, humanhuman

TSL 1 (best) BASIC

Gene RARA, Length 2,285 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-202ENST00000394081 NISCHQ9Y2I1 1504 aa44.66■■■■■ 4.74
RARA-202ENST00000394081 SHROOM4Q9ULL8 1493 aa38.35■■■■□ 3.73
RARA-202ENST00000394081 HRCP23327 699 aa38.22■■■■□ 3.71
RARA-202ENST00000394081 SUPT5HO00267 1087 aaKnown RBP38.09■■■■□ 3.69
RARA-202ENST00000394081 ZCCHC6Q5VYS8 1495 aaKnown RBP38■■■■□ 3.67
RARA-202ENST00000394081 MYO15BQ96JP2 1530 aa37.74■■■■□ 3.63
RARA-202ENST00000394081 CHIC1Q5VXU3 224 aa37.69■■■■□ 3.62
RARA-202ENST00000394081 CCDC180Q9P1Z9 1646 aa37.68■■■■□ 3.62
RARA-202ENST00000394081 PCGF6Q9BYE7 350 aa37.34■■■■□ 3.57
RARA-202ENST00000394081 DCAF1Q9Y4B6 1507 aa37.32■■■■□ 3.57
RARA-202ENST00000394081 PPARGC1BQ86YN6 1023 aaKnown RBP36.94■■■■□ 3.5
RARA-202ENST00000394081 TRIM26Q12899 539 aaPredicted RBP36.65■■■■□ 3.46
RARA-202ENST00000394081 PELP1Q8IZL8 1130 aaKnown RBP36.54■■■■□ 3.44
RARA-202ENST00000394081 ZEB1P37275 1124 aaPredicted RBP36.43■■■■□ 3.42
RARA-202ENST00000394081 LOC105371045A0A1W2PR82 267 aa36.42■■■■□ 3.42
RARA-202ENST00000394081 DCAF8L2P0C7V8 631 aa36.3■■■■□ 3.4
RARA-202ENST00000394081 ABCC9O60706 1549 aa36.06■■■■□ 3.36
RARA-202ENST00000394081 SCAF1Q9H7N4 1312 aaKnown RBP35.68■■■■□ 3.3
RARA-202ENST00000394081 RSF1Q96T23 1441 aaPredicted RBP35.64■■■■□ 3.3
RARA-202ENST00000394081 TRIM41Q8WV44 630 aa35.57■■■■□ 3.28
RARA-202ENST00000394081 RB1CC1Q8TDY2 1594 aa35.52■■■■□ 3.28
RARA-202ENST00000394081 SCRIBQ14160 1630 aa35.19■■■■□ 3.22
RARA-202ENST00000394081 ACIN1Q9UKV3 1341 aaKnown RBP35.14■■■■□ 3.22
RARA-202ENST00000394081 MYT1Q01538 1121 aa35.13■■■■□ 3.21
RARA-202ENST00000394081 FAM9AQ8IZU1 332 aaPredicted RBP35.08■■■■□ 3.21
RARA-202ENST00000394081 CENPBP07199 599 aaPredicted RBP34.88■■■■□ 3.17
RARA-202ENST00000394081 NEUROD1Q13562 356 aa34.87■■■■□ 3.17
RARA-202ENST00000394081 CCER1Q8TC90 406 aaPredicted RBP34.83■■■■□ 3.17
RARA-202ENST00000394081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.74■■■■□ 3.15
RARA-202ENST00000394081 DIEXFQ68CQ4 756 aaKnown RBP34.73■■■■□ 3.15
RARA-202ENST00000394081 WRNQ14191 1432 aaPredicted RBP eCLIP34.7■■■■□ 3.15
RARA-202ENST00000394081 MROH2BQ7Z745 1585 aa34.67■■■■□ 3.14
RARA-202ENST00000394081 EIF4G1Q04637 1599 aaKnown RBP34.64■■■■□ 3.14
RARA-202ENST00000394081 GTF3C3Q9Y5Q9 886 aa34.64■■■■□ 3.14
RARA-202ENST00000394081 CECR2Q9BXF3 1484 aa34.61■■■■□ 3.13
RARA-202ENST00000394081 NACADO15069 1562 aa34.57■■■■□ 3.12
RARA-202ENST00000394081 EHMT2Q96KQ7 1210 aa34.57■■■■□ 3.12
RARA-202ENST00000394081 BAZ1AQ9NRL2 1556 aaPredicted RBP34.56■■■■□ 3.12
RARA-202ENST00000394081 WIZO95785 1651 aa34.52■■■■□ 3.12
RARA-202ENST00000394081 CEP162Q5TB80 1403 aa34.29■■■■□ 3.08
RARA-202ENST00000394081 ZNF316A6NFI3 1004 aaPredicted RBP34.29■■■■□ 3.08
RARA-202ENST00000394081 TNIKQ9UKE5 1360 aa34.27■■■■□ 3.08
RARA-202ENST00000394081 EEA1Q15075 1411 aa34.2■■■■□ 3.07
RARA-202ENST00000394081 TOP2AP11388 1531 aaKnown RBP34.13■■■■□ 3.05
RARA-202ENST00000394081 CCDC88BA6NC98 1476 aa34.1■■■■□ 3.05
RARA-202ENST00000394081 ABCC8Q09428 1581 aa34.02■■■■□ 3.04
RARA-202ENST00000394081 SMARCA2P51531 1590 aa33.93■■■■□ 3.02
RARA-202ENST00000394081 SOGA1O94964 1423 aa33.89■■■■□ 3.02
RARA-202ENST00000394081 GOLGA3Q08378 1498 aa33.89■■■■□ 3.02
RARA-202ENST00000394081 CSRNP3Q8WYN3 585 aa33.87■■■■□ 3.01
RARA-202ENST00000394081 SMARCA4P51532 1647 aa33.82■■■■□ 3
RARA-202ENST00000394081 MIER1Q8N108 512 aa33.77■■■■□ 3
RARA-202ENST00000394081 TTBK1Q5TCY1 1321 aaPredicted RBP33.77■■■■□ 3
RARA-202ENST00000394081 CLSPNQ9HAW4 1339 aa33.77■■■■□ 3
RARA-202ENST00000394081 YTHDC1Q96MU7 727 aaKnown RBP33.73■■■□□ 2.99
RARA-202ENST00000394081 UBTFP17480 764 aaKnown RBP33.69■■■□□ 2.98
RARA-202ENST00000394081 KIF21BO75037 1637 aa33.64■■■□□ 2.98
RARA-202ENST00000394081 RUSC2Q8N2Y8 1516 aa33.63■■■□□ 2.97
RARA-202ENST00000394081 CEP164Q9UPV0 1460 aa33.62■■■□□ 2.97
RARA-202ENST00000394081 VPS8Q8N3P4 1428 aa33.51■■■□□ 2.95
RARA-202ENST00000394081 BAZ1BQ9UIG0 1483 aaKnown RBP33.48■■■□□ 2.95
RARA-202ENST00000394081 CLIP1P30622 1438 aa33.46■■■□□ 2.95
RARA-202ENST00000394081 HNRNPUL2Q1KMD3 747 aaKnown RBP33.44■■■□□ 2.94
RARA-202ENST00000394081 APLP2Q06481 763 aa33.27■■■□□ 2.92
RARA-202ENST00000394081 PEG3Q9GZU2 1588 aa33.26■■■□□ 2.91
RARA-202ENST00000394081 SYNJ1O43426 1573 aa33.24■■■□□ 2.91
RARA-202ENST00000394081 UNC13AQ9UPW8 1703 aa33.22■■■□□ 2.91
RARA-202ENST00000394081 SUPT16HQ9Y5B9 1047 aaKnown RBP33.21■■■□□ 2.91
RARA-202ENST00000394081 DHX57Q6P158 1386 aaKnown RBP33.16■■■□□ 2.9
RARA-202ENST00000394081 RAPGEF2Q9Y4G8 1499 aa33.08■■■□□ 2.89
RARA-202ENST00000394081 CUX2O14529 1486 aa32.98■■■□□ 2.87
RARA-202ENST00000394081 ERICH3Q5RHP9 1530 aa32.96■■■□□ 2.87
RARA-202ENST00000394081 TSHZ2Q9NRE2 1034 aa32.93■■■□□ 2.86
RARA-202ENST00000394081 RRBP1Q9P2E9 1410 aaKnown RBP32.91■■■□□ 2.86
RARA-202ENST00000394081 ANP32EQ9BTT0 268 aa32.89■■■□□ 2.86
RARA-202ENST00000394081 TOP2BQ02880 1626 aa32.87■■■□□ 2.85
RARA-202ENST00000394081 DNAJC5BQ9UF47 199 aa32.85■■■□□ 2.85
RARA-202ENST00000394081 ARAP1Q96P48 1450 aa32.82■■■□□ 2.84
RARA-202ENST00000394081 PABPN1Q86U42 306 aaKnown RBP eCLIP32.79■■■□□ 2.84
RARA-202ENST00000394081 PRXQ9BXM0 1461 aa32.78■■■□□ 2.84
RARA-202ENST00000394081 BIVM-ERCC5R4GMW8 1640 aa32.76■■■□□ 2.84
RARA-202ENST00000394081 BICRAQ9NZM4 1560 aa32.75■■■□□ 2.83
RARA-202ENST00000394081 ATAD2BQ9ULI0 1458 aa32.69■■■□□ 2.82
RARA-202ENST00000394081 CCNB3Q8WWL7 1395 aa32.63■■■□□ 2.81
RARA-202ENST00000394081 KANK4Q5T7N3 995 aaPredicted RBP32.6■■■□□ 2.81
RARA-202ENST00000394081 MAPKBP1O60336 1514 aa32.49■■■□□ 2.79
RARA-202ENST00000394081 RANGAP1P46060 587 aaPredicted RBP32.49■■■□□ 2.79
RARA-202ENST00000394081 MAP3K1Q13233 1512 aa32.46■■■□□ 2.79
RARA-202ENST00000394081 RAB3GAP2Q9H2M9 1393 aa32.4■■■□□ 2.78
RARA-202ENST00000394081 KIF27Q86VH2 1401 aa32.38■■■□□ 2.77
RARA-202ENST00000394081 ARHGAP35Q9NRY4 1499 aa32.38■■■□□ 2.77
RARA-202ENST00000394081 TIMELESSQ9UNS1 1208 aa32.37■■■□□ 2.77
RARA-202ENST00000394081 KCNH8Q96L42 1107 aa32.34■■■□□ 2.77
RARA-202ENST00000394081 FKBP8Q14318 412 aa32.33■■■□□ 2.77
RARA-202ENST00000394081 BCL11AQ9H165 835 aa32.33■■■□□ 2.77
RARA-202ENST00000394081 SETD5Q9C0A6 1442 aa32.31■■■□□ 2.76
RARA-202ENST00000394081 CCER2I3L3R5 266 aa32.3■■■□□ 2.76
RARA-202ENST00000394081 NEFLP07196 543 aa32.29■■■□□ 2.76
RARA-202ENST00000394081 TIAM1Q13009 1591 aa32.27■■■□□ 2.76
RARA-202ENST00000394081 WDR97A6NE52 1622 aa32.25■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms