Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CKS1BP61024 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CKS1BP61024 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
CKS1BP61024 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
CKS1BP61024 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CKS1BP61024 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CKS1BP61024 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC22.09■■□□□ 1.13
CKS1BP61024 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
CKS1BP61024 HES6-203ENST00000409160 1600 ntTSL 2 BASIC21.84■■□□□ 1.09
CKS1BP61024 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CKS1BP61024 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.78■■□□□ 1.08
CKS1BP61024 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CKS1BP61024 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CKS1BP61024 AL356512.1-201ENST00000607453 1739 ntBASIC21.75■■□□□ 1.07
CKS1BP61024 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CKS1BP61024 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC21.57■■□□□ 1.04
CKS1BP61024 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CKS1BP61024 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CKS1BP61024 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CKS1BP61024 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC21.4■■□□□ 1.02
CKS1BP61024 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CKS1BP61024 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CKS1BP61024 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CKS1BP61024 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CKS1BP61024 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CKS1BP61024 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC21.15■□□□□ 0.98
CKS1BP61024 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CKS1BP61024 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CKS1BP61024 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CKS1BP61024 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
CKS1BP61024 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CKS1BP61024 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21■□□□□ 0.95
CKS1BP61024 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CKS1BP61024 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CKS1BP61024 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CKS1BP61024 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CKS1BP61024 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CKS1BP61024 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CKS1BP61024 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CKS1BP61024 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CKS1BP61024 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CKS1BP61024 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CKS1BP61024 AL161658.1-201ENST00000623641 1967 ntBASIC20.67■□□□□ 0.9
CKS1BP61024 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CKS1BP61024 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CKS1BP61024 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CKS1BP61024 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CKS1BP61024 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CKS1BP61024 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CKS1BP61024 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CKS1BP61024 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CKS1BP61024 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
CKS1BP61024 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CKS1BP61024 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CKS1BP61024 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CKS1BP61024 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CKS1BP61024 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC20.41■□□□□ 0.86
CKS1BP61024 AC139426.1-201ENST00000568218 2529 ntBASIC20.37■□□□□ 0.85
CKS1BP61024 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CKS1BP61024 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CKS1BP61024 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CKS1BP61024 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
CKS1BP61024 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CKS1BP61024 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CKS1BP61024 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC20.24■□□□□ 0.83
CKS1BP61024 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CKS1BP61024 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CKS1BP61024 ST7-202ENST00000323984 2142 ntTSL 5 BASIC20.22■□□□□ 0.83
CKS1BP61024 ST7-207ENST00000393449 2127 ntTSL 5 BASIC20.22■□□□□ 0.83
CKS1BP61024 ST7-205ENST00000393446 2114 ntTSL 5 BASIC20.21■□□□□ 0.83
CKS1BP61024 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC20.21■□□□□ 0.83
CKS1BP61024 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CKS1BP61024 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CKS1BP61024 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CKS1BP61024 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CKS1BP61024 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CKS1BP61024 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.18■□□□□ 0.82
CKS1BP61024 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CKS1BP61024 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.17■□□□□ 0.82
CKS1BP61024 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.16■□□□□ 0.82
CKS1BP61024 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CKS1BP61024 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CKS1BP61024 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CKS1BP61024 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CKS1BP61024 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CKS1BP61024 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CKS1BP61024 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.08■□□□□ 0.81
CKS1BP61024 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CKS1BP61024 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CKS1BP61024 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CKS1BP61024 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CKS1BP61024 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CKS1BP61024 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CKS1BP61024 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CKS1BP61024 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CKS1BP61024 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC20■□□□□ 0.79
CKS1BP61024 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.99■□□□□ 0.79
CKS1BP61024 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CKS1BP61024 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CKS1BP61024 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms