RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 NISCHQ9Y2I1 1504 aa47.17■■■■■ 5.14
TSKU-201ENST00000333090 SHROOM4Q9ULL8 1493 aa40.82■■■■■ 4.13
TSKU-201ENST00000333090 SUPT5HO00267 1087 aaKnown RBP40.36■■■■■ 4.05
TSKU-201ENST00000333090 CCDC180Q9P1Z9 1646 aa39.88■■■■□ 3.97
TSKU-201ENST00000333090 DCAF8L2P0C7V8 631 aa39.83■■■■□ 3.97
TSKU-201ENST00000333090 ZCCHC6Q5VYS8 1495 aaKnown RBP39.81■■■■□ 3.96
TSKU-201ENST00000333090 MYO15BQ96JP2 1530 aa39.45■■■■□ 3.91
TSKU-201ENST00000333090 CHIC1Q5VXU3 224 aa39.43■■■■□ 3.9
TSKU-201ENST00000333090 HRCP23327 699 aa39.38■■■■□ 3.89
TSKU-201ENST00000333090 PCGF6Q9BYE7 350 aa39.02■■■■□ 3.84
TSKU-201ENST00000333090 PPARGC1BQ86YN6 1023 aaKnown RBP38.58■■■■□ 3.77
TSKU-201ENST00000333090 DCAF1Q9Y4B6 1507 aa38.45■■■■□ 3.75
TSKU-201ENST00000333090 LOC105371045A0A1W2PR82 267 aa38.4■■■■□ 3.74
TSKU-201ENST00000333090 TRIM26Q12899 539 aaPredicted RBP38■■■■□ 3.67
TSKU-201ENST00000333090 SCRIBQ14160 1630 aa37.85■■■■□ 3.65
TSKU-201ENST00000333090 ABCC9O60706 1549 aa37.72■■■■□ 3.63
TSKU-201ENST00000333090 RSF1Q96T23 1441 aaPredicted RBP37.46■■■■□ 3.59
TSKU-201ENST00000333090 TRIM41Q8WV44 630 aa37.45■■■■□ 3.59
TSKU-201ENST00000333090 ZEB1P37275 1124 aaPredicted RBP37.42■■■■□ 3.58
TSKU-201ENST00000333090 FAM9AQ8IZU1 332 aaPredicted RBP37.31■■■■□ 3.56
TSKU-201ENST00000333090 RB1CC1Q8TDY2 1594 aa37.19■■■■□ 3.54
TSKU-201ENST00000333090 EHMT2Q96KQ7 1210 aa37.09■■■■□ 3.53
TSKU-201ENST00000333090 CECR2Q9BXF3 1484 aa37.08■■■■□ 3.53
TSKU-201ENST00000333090 NACADO15069 1562 aa37.02■■■■□ 3.52
TSKU-201ENST00000333090 MROH2BQ7Z745 1585 aa36.83■■■■□ 3.49
TSKU-201ENST00000333090 SCAF1Q9H7N4 1312 aaKnown RBP36.76■■■■□ 3.47
TSKU-201ENST00000333090 PELP1Q8IZL8 1130 aaKnown RBP36.7■■■■□ 3.47
TSKU-201ENST00000333090 WIZO95785 1651 aa36.62■■■■□ 3.45
TSKU-201ENST00000333090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.47■■■■□ 3.43
TSKU-201ENST00000333090 CCER1Q8TC90 406 aaPredicted RBP36.4■■■■□ 3.42
TSKU-201ENST00000333090 PABPN1Q86U42 306 aaKnown RBP eCLIP36.25■■■■□ 3.39
TSKU-201ENST00000333090 BAZ1AQ9NRL2 1556 aaPredicted RBP36.16■■■■□ 3.38
TSKU-201ENST00000333090 ACIN1Q9UKV3 1341 aaKnown RBP36.15■■■■□ 3.38
TSKU-201ENST00000333090 EIF4G1Q04637 1599 aaKnown RBP36.1■■■■□ 3.37
TSKU-201ENST00000333090 NEUROD1Q13562 356 aa36.09■■■■□ 3.37
TSKU-201ENST00000333090 UNC13AQ9UPW8 1703 aa36.08■■■■□ 3.37
TSKU-201ENST00000333090 TTBK1Q5TCY1 1321 aaPredicted RBP36.07■■■■□ 3.36
TSKU-201ENST00000333090 DIEXFQ68CQ4 756 aaKnown RBP36.03■■■■□ 3.36
TSKU-201ENST00000333090 SMARCA4P51532 1647 aa35.94■■■■□ 3.34
TSKU-201ENST00000333090 ABCC8Q09428 1581 aa35.92■■■■□ 3.34
TSKU-201ENST00000333090 WRNQ14191 1432 aaPredicted RBP eCLIP35.91■■■■□ 3.34
TSKU-201ENST00000333090 CCDC88BA6NC98 1476 aa35.91■■■■□ 3.34
TSKU-201ENST00000333090 CEP162Q5TB80 1403 aa35.87■■■■□ 3.33
TSKU-201ENST00000333090 CENPBP07199 599 aaPredicted RBP35.85■■■■□ 3.33
TSKU-201ENST00000333090 TOP2AP11388 1531 aaKnown RBP35.83■■■■□ 3.33
TSKU-201ENST00000333090 GTF3C3Q9Y5Q9 886 aa35.82■■■■□ 3.32
TSKU-201ENST00000333090 SOGA1O94964 1423 aa35.74■■■■□ 3.31
TSKU-201ENST00000333090 SMARCA2P51531 1590 aa35.71■■■■□ 3.31
TSKU-201ENST00000333090 TNIKQ9UKE5 1360 aa35.7■■■■□ 3.31
TSKU-201ENST00000333090 BICRAQ9NZM4 1560 aa35.69■■■■□ 3.3
TSKU-201ENST00000333090 UBTFP17480 764 aaKnown RBP35.63■■■■□ 3.29
TSKU-201ENST00000333090 CSRNP3Q8WYN3 585 aa35.59■■■■□ 3.29
TSKU-201ENST00000333090 ZNF316A6NFI3 1004 aaPredicted RBP35.54■■■■□ 3.28
TSKU-201ENST00000333090 RUSC2Q8N2Y8 1516 aa35.53■■■■□ 3.28
TSKU-201ENST00000333090 EEA1Q15075 1411 aa35.51■■■■□ 3.28
TSKU-201ENST00000333090 GOLGA3Q08378 1498 aa35.39■■■■□ 3.26
TSKU-201ENST00000333090 YTHDC1Q96MU7 727 aaKnown RBP35.34■■■■□ 3.25
TSKU-201ENST00000333090 HNRNPUL2Q1KMD3 747 aaKnown RBP35.28■■■■□ 3.24
TSKU-201ENST00000333090 MIER1Q8N108 512 aa35.17■■■■□ 3.22
TSKU-201ENST00000333090 ATAD2BQ9ULI0 1458 aa35.14■■■■□ 3.22
TSKU-201ENST00000333090 CEP164Q9UPV0 1460 aa35.1■■■■□ 3.21
TSKU-201ENST00000333090 PEG3Q9GZU2 1588 aa35.07■■■■□ 3.2
TSKU-201ENST00000333090 CLIP1P30622 1438 aa35.07■■■■□ 3.2
TSKU-201ENST00000333090 BAZ1BQ9UIG0 1483 aaKnown RBP35.05■■■■□ 3.2
TSKU-201ENST00000333090 MYT1Q01538 1121 aa34.99■■■■□ 3.19
TSKU-201ENST00000333090 KIF21BO75037 1637 aa34.98■■■■□ 3.19
TSKU-201ENST00000333090 SYNJ1O43426 1573 aa34.97■■■■□ 3.19
TSKU-201ENST00000333090 APLP2Q06481 763 aa34.97■■■■□ 3.19
TSKU-201ENST00000333090 VPS8Q8N3P4 1428 aa34.96■■■■□ 3.19
TSKU-201ENST00000333090 RANGAP1P46060 587 aaPredicted RBP34.92■■■■□ 3.18
TSKU-201ENST00000333090 RAPGEF2Q9Y4G8 1499 aa34.81■■■■□ 3.16
TSKU-201ENST00000333090 CLSPNQ9HAW4 1339 aa34.54■■■■□ 3.12
TSKU-201ENST00000333090 DHX57Q6P158 1386 aaKnown RBP34.54■■■■□ 3.12
TSKU-201ENST00000333090 TOP2BQ02880 1626 aa34.41■■■■□ 3.1
TSKU-201ENST00000333090 KANK4Q5T7N3 995 aaPredicted RBP34.4■■■■□ 3.1
TSKU-201ENST00000333090 NCAPD3P42695 1498 aa34.37■■■■□ 3.09
TSKU-201ENST00000333090 ARAP1Q96P48 1450 aa34.36■■■■□ 3.09
TSKU-201ENST00000333090 ERICH3Q5RHP9 1530 aa34.3■■■■□ 3.08
TSKU-201ENST00000333090 PRXQ9BXM0 1461 aa34.3■■■■□ 3.08
TSKU-201ENST00000333090 SUPT16HQ9Y5B9 1047 aaKnown RBP34.3■■■■□ 3.08
TSKU-201ENST00000333090 CUX1P39880 1505 aa34.25■■■■□ 3.07
TSKU-201ENST00000333090 HMGXB3Q12766 1538 aa34.24■■■■□ 3.07
TSKU-201ENST00000333090 BIVM-ERCC5R4GMW8 1640 aa34.22■■■■□ 3.07
TSKU-201ENST00000333090 RRBP1Q9P2E9 1410 aaKnown RBP34.21■■■■□ 3.07
TSKU-201ENST00000333090 ITGAEP38570 1179 aa34.13■■■■□ 3.05
TSKU-201ENST00000333090 CCNB3Q8WWL7 1395 aa34.11■■■■□ 3.05
TSKU-201ENST00000333090 CFTRP13569 1480 aa34.1■■■■□ 3.05
TSKU-201ENST00000333090 CUX2O14529 1486 aa34.07■■■■□ 3.04
TSKU-201ENST00000333090 KIF27Q86VH2 1401 aa34.04■■■■□ 3.04
TSKU-201ENST00000333090 ARHGAP35Q9NRY4 1499 aa33.97■■■■□ 3.03
TSKU-201ENST00000333090 KCNH8Q96L42 1107 aa33.94■■■■□ 3.02
TSKU-201ENST00000333090 RAB3GAP2Q9H2M9 1393 aa33.91■■■■□ 3.02
TSKU-201ENST00000333090 TSHZ2Q9NRE2 1034 aa33.91■■■■□ 3.02
TSKU-201ENST00000333090 CADPSQ9ULU8 1353 aa33.83■■■■□ 3.01
TSKU-201ENST00000333090 MAPKBP1O60336 1514 aa33.82■■■■□ 3
TSKU-201ENST00000333090 CC2D2AQ9P2K1 1620 aa33.76■■■□□ 2.99
TSKU-201ENST00000333090 IGF1RP08069 1367 aa33.74■■■□□ 2.99
TSKU-201ENST00000333090 DDX10Q13206 875 aaKnown RBP33.72■■■□□ 2.99
TSKU-201ENST00000333090 SETD5Q9C0A6 1442 aa33.71■■■□□ 2.99
TSKU-201ENST00000333090 BCANQ96GW7 911 aa33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms