Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.25■■■□□ 2.43
SH3RF1Q7Z6J0 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.25■■■□□ 2.43
SH3RF1Q7Z6J0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SH3RF1Q7Z6J0 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SH3RF1Q7Z6J0 AL161658.1-201ENST00000623641 1967 ntBASIC30.24■■■□□ 2.43
SH3RF1Q7Z6J0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
SH3RF1Q7Z6J0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SH3RF1Q7Z6J0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
SH3RF1Q7Z6J0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.23■■■□□ 2.43
SH3RF1Q7Z6J0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
SH3RF1Q7Z6J0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SH3RF1Q7Z6J0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SH3RF1Q7Z6J0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SH3RF1Q7Z6J0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SH3RF1Q7Z6J0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
SH3RF1Q7Z6J0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.21■■■□□ 2.43
SH3RF1Q7Z6J0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.2■■■□□ 2.43
SH3RF1Q7Z6J0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SH3RF1Q7Z6J0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
SH3RF1Q7Z6J0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
SH3RF1Q7Z6J0 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
SH3RF1Q7Z6J0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SH3RF1Q7Z6J0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SH3RF1Q7Z6J0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SH3RF1Q7Z6J0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SH3RF1Q7Z6J0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SH3RF1Q7Z6J0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
SH3RF1Q7Z6J0 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
SH3RF1Q7Z6J0 AC016575.1-201ENST00000607026 382 ntBASIC30.17■■■□□ 2.42
SH3RF1Q7Z6J0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SH3RF1Q7Z6J0 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SH3RF1Q7Z6J0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.16■■■□□ 2.42
SH3RF1Q7Z6J0 HSD17B1P1-201ENST00000590052 955 ntBASIC30.16■■■□□ 2.42
SH3RF1Q7Z6J0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SH3RF1Q7Z6J0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 MIR3648-2-201ENST00000581792 180 ntBASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 MIR3648-1-201ENST00000615959 180 ntBASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SH3RF1Q7Z6J0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SH3RF1Q7Z6J0 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.14■■■□□ 2.42
SH3RF1Q7Z6J0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.14■■■□□ 2.42
SH3RF1Q7Z6J0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SH3RF1Q7Z6J0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.13■■■□□ 2.41
SH3RF1Q7Z6J0 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.12■■■□□ 2.41
SH3RF1Q7Z6J0 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.12■■■□□ 2.41
SH3RF1Q7Z6J0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
SH3RF1Q7Z6J0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.11■■■□□ 2.41
SH3RF1Q7Z6J0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SH3RF1Q7Z6J0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
SH3RF1Q7Z6J0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SH3RF1Q7Z6J0 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SH3RF1Q7Z6J0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SH3RF1Q7Z6J0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SH3RF1Q7Z6J0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SH3RF1Q7Z6J0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
SH3RF1Q7Z6J0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.08■■■□□ 2.41
SH3RF1Q7Z6J0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SH3RF1Q7Z6J0 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
SH3RF1Q7Z6J0 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.07■■■□□ 2.4
SH3RF1Q7Z6J0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.07■■■□□ 2.4
SH3RF1Q7Z6J0 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SH3RF1Q7Z6J0 ST7-AS1-201ENST00000456775 1889 ntBASIC30.06■■■□□ 2.4
SH3RF1Q7Z6J0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SH3RF1Q7Z6J0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SH3RF1Q7Z6J0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SH3RF1Q7Z6J0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
SH3RF1Q7Z6J0 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SH3RF1Q7Z6J0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SH3RF1Q7Z6J0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SH3RF1Q7Z6J0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.03■■■□□ 2.4
SH3RF1Q7Z6J0 MIR6090-201ENST00000622481 60 ntBASIC30.03■■■□□ 2.4
SH3RF1Q7Z6J0 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SH3RF1Q7Z6J0 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.03■■■□□ 2.4
SH3RF1Q7Z6J0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SH3RF1Q7Z6J0 ABCB10P3-201ENST00000561950 2166 ntBASIC30.01■■■□□ 2.39
SH3RF1Q7Z6J0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.01■■■□□ 2.39
SH3RF1Q7Z6J0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
SH3RF1Q7Z6J0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SH3RF1Q7Z6J0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30■■■□□ 2.39
SH3RF1Q7Z6J0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SH3RF1Q7Z6J0 CR559946.2-201ENST00000623684 991 ntBASIC29.99■■■□□ 2.39
SH3RF1Q7Z6J0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SH3RF1Q7Z6J0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.97■■■□□ 2.39
SH3RF1Q7Z6J0 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SH3RF1Q7Z6J0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SH3RF1Q7Z6J0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
SH3RF1Q7Z6J0 DUX4L11-201ENST00000611504 1267 ntBASIC29.96■■■□□ 2.39
SH3RF1Q7Z6J0 DUX4L12-201ENST00000614593 1267 ntBASIC29.96■■■□□ 2.39
SH3RF1Q7Z6J0 DUX4L14-201ENST00000621227 1267 ntBASIC29.96■■■□□ 2.39
SH3RF1Q7Z6J0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.95■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms