Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.99■■■□□ 2.07
PCDHA3Q9Y5H8 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PCDHA3Q9Y5H8 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
PCDHA3Q9Y5H8 AL135925.1-201ENST00000605920 1701 ntBASIC27.98■■■□□ 2.07
PCDHA3Q9Y5H8 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.97■■■□□ 2.07
PCDHA3Q9Y5H8 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.96■■■□□ 2.07
PCDHA3Q9Y5H8 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PCDHA3Q9Y5H8 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PCDHA3Q9Y5H8 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
PCDHA3Q9Y5H8 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
PCDHA3Q9Y5H8 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCDHA3Q9Y5H8 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCDHA3Q9Y5H8 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCDHA3Q9Y5H8 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCDHA3Q9Y5H8 WASH5P-204ENST00000632292 975 ntBASIC27.91■■■□□ 2.06
PCDHA3Q9Y5H8 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCDHA3Q9Y5H8 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.9■■■□□ 2.06
PCDHA3Q9Y5H8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.9■■■□□ 2.06
PCDHA3Q9Y5H8 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC27.89■■■□□ 2.06
PCDHA3Q9Y5H8 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.88■■■□□ 2.05
PCDHA3Q9Y5H8 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.88■■■□□ 2.05
PCDHA3Q9Y5H8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.88■■■□□ 2.05
PCDHA3Q9Y5H8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
PCDHA3Q9Y5H8 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.87■■■□□ 2.05
PCDHA3Q9Y5H8 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
PCDHA3Q9Y5H8 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.86■■■□□ 2.05
PCDHA3Q9Y5H8 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC27.86■■■□□ 2.05
PCDHA3Q9Y5H8 AL133380.1-201ENST00000506013 324 ntBASIC27.85■■■□□ 2.05
PCDHA3Q9Y5H8 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
PCDHA3Q9Y5H8 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
PCDHA3Q9Y5H8 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.83■■■□□ 2.05
PCDHA3Q9Y5H8 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC27.83■■■□□ 2.05
PCDHA3Q9Y5H8 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC27.82■■■□□ 2.04
PCDHA3Q9Y5H8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.82■■■□□ 2.04
PCDHA3Q9Y5H8 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
PCDHA3Q9Y5H8 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC27.81■■■□□ 2.04
PCDHA3Q9Y5H8 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
PCDHA3Q9Y5H8 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
PCDHA3Q9Y5H8 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.8■■■□□ 2.04
PCDHA3Q9Y5H8 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
PCDHA3Q9Y5H8 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCDHA3Q9Y5H8 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PCDHA3Q9Y5H8 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.78■■■□□ 2.04
PCDHA3Q9Y5H8 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PCDHA3Q9Y5H8 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PCDHA3Q9Y5H8 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
PCDHA3Q9Y5H8 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCDHA3Q9Y5H8 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
PCDHA3Q9Y5H8 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC27.76■■■□□ 2.03
PCDHA3Q9Y5H8 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC27.76■■■□□ 2.03
PCDHA3Q9Y5H8 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC27.75■■■□□ 2.03
PCDHA3Q9Y5H8 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.74■■■□□ 2.03
PCDHA3Q9Y5H8 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
PCDHA3Q9Y5H8 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
PCDHA3Q9Y5H8 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
PCDHA3Q9Y5H8 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
PCDHA3Q9Y5H8 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
PCDHA3Q9Y5H8 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCDHA3Q9Y5H8 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PCDHA3Q9Y5H8 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
PCDHA3Q9Y5H8 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
PCDHA3Q9Y5H8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHA3Q9Y5H8 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHA3Q9Y5H8 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
PCDHA3Q9Y5H8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.64■■■□□ 2.02
PCDHA3Q9Y5H8 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCDHA3Q9Y5H8 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27.63■■■□□ 2.01
PCDHA3Q9Y5H8 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
PCDHA3Q9Y5H8 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
PCDHA3Q9Y5H8 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
PCDHA3Q9Y5H8 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
PCDHA3Q9Y5H8 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.61■■■□□ 2.01
PCDHA3Q9Y5H8 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
PCDHA3Q9Y5H8 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
PCDHA3Q9Y5H8 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC27.6■■■□□ 2.01
PCDHA3Q9Y5H8 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
PCDHA3Q9Y5H8 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.59■■■□□ 2.01
PCDHA3Q9Y5H8 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA3Q9Y5H8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA3Q9Y5H8 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA3Q9Y5H8 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
PCDHA3Q9Y5H8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
PCDHA3Q9Y5H8 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC27.58■■■□□ 2.01
PCDHA3Q9Y5H8 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC27.57■■■□□ 2
PCDHA3Q9Y5H8 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.57■■■□□ 2
PCDHA3Q9Y5H8 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
PCDHA3Q9Y5H8 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
PCDHA3Q9Y5H8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
PCDHA3Q9Y5H8 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC27.55■■■□□ 2
PCDHA3Q9Y5H8 AL139393.2-201ENST00000608721 2025 ntBASIC27.55■■■□□ 2
PCDHA3Q9Y5H8 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.54■■■□□ 2
PCDHA3Q9Y5H8 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PCDHA3Q9Y5H8 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PCDHA3Q9Y5H8 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PCDHA3Q9Y5H8 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PCDHA3Q9Y5H8 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC27.52■■■□□ 2
PCDHA3Q9Y5H8 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC27.52■■■□□ 2
PCDHA3Q9Y5H8 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PCDHA3Q9Y5H8 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PCDHA3Q9Y5H8 RARRES2P7-201ENST00000567349 469 ntBASIC27.52■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms